Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq145 206 3e-48 seq129 114 1e-20 >seq145 Length=311005 Score = 206 bits (228), Expect = 3e-48 Identities = 472/705 (67%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| | |||||| | ||||||||||| ||||| | |||||||| || | Sbjct 104783 GAGACATACAATTTAATGTCCAGCAAGTACTTTACACACGCGTCTCCAACCCTCTTTGCC 104842 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || || | || | || |||||| || | | |||||||| ||| Sbjct 104843 GCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGACAGT 104902 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 |||||||| || ||||| || |||||| |||||| ||||||||| | || ||| Sbjct 104903 ATCGACGGGATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGGAGGT 104962 Query 53423 ATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 |||||| | | | | | ||| ||||||| | || | || || || |||| Sbjct 104963 ATCGGTCTGAATGTCCACAGAA--TCCGTGCCACTGGAGCTTACATTGCTGGCACAAACG 105020 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | || | || || || ||||||||||| || ||||||||||| ||| | || || Sbjct 105021 GGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGTTG 105080 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 |||||||||| |||||| || | ||||| |||||||||||||| |||||||| | Sbjct 105081 ACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGCTG 105140 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 | | | ||||| || || || || ||| || || | || || | ||| || | Sbjct 105141 ATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTTCGCGCTCGCG 105200 Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 | || || ||| ||||| |||||||| || ||||||||| | || |||||| | | Sbjct 105201 ATCTCTTCTAC-GCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGT 105259 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 ||| ||||||||||| |||||||||||||| || | ||| |||||||| || Sbjct 105260 ACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAA 105319 Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833 ||| | | | ||| || |||| | || |||| ||| |||| || Sbjct 105320 TTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGC------AAGACCATC 105373 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 ||||| | || | ||| | | |||||| || || ||||| |||| || | | Sbjct 105374 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 105433 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||||||||| | |||| ||||| || ||||||||| Sbjct 105434 ATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAAC 105478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||||| ||| || |||||||| | ||| | | || | ||| || Sbjct 106251 TCAAGGCTCTTTACAAGACTGTCTGGGAGATCTCCCAGCGTACCATCGTTCAGATGGCTG 106310 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 ||||||||||||| | ||||||||||||||| || |||||||| |||| || |||| Sbjct 106311 CTGATCGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAA 106370 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | |||||||| || |||||| ||| || ||||| || | Sbjct 106371 CTATGGGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGGCA 106430 Query 55908 TGTACTATCTGCGGACC 55924 ||||||| || || ||| Sbjct 106431 TGTACTACCTCCGTACC 106447 >seq129 Length=626472 Score = 114 bits (126), Expect = 1e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || |||||||| |||| || | || | | |||||| | Sbjct 326630 GTGAAAATGTAACGAGGACTAGCAGCATCACTGCCTCCCGATAGCCTAGAACCGAAAGAT 326689 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||||||| |||||| ||||| |||||| | ||| | ||||| || |||| ||| Sbjct 326690 CCACTCGGTTCCAAGCAGTTCACGTTGTTTGAGCCGATGAAGTTCTGGGCCAGACCAACA 326749 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || | | | || || || ||||| || | ||||| | |||||| || Sbjct 326750 ATAGTCATGTGCATGGAAGTTTCGCCGTGATGATAAGCAGCGTGCTCGGACACGTATCCT 326809 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 || |||| | || ||||||||| || || || ||||| ||| ||| | || ||| Sbjct 326810 GCTAGCTCGACAACTTTCATGTCTTTGGTGAGATTTCGCTTGAAGCAAGCAAACATAACC 326869 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 || || |||| ||||| | ||||| Sbjct 326870 TTTCGTTGACCAGGCTTTAATCCATC 326895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214878207200