Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq145 206 3e-48
seq129 114 1e-20
>seq145
Length=311005
Score = 206 bits (228), Expect = 3e-48
Identities = 472/705 (67%), Gaps = 18/705 (3%)
Strand=Plus/Plus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||| ||| | |||||| | ||||||||||| ||||| | |||||||| || |
Sbjct 104783 GAGACATACAATTTAATGTCCAGCAAGTACTTTACACACGCGTCTCCAACCCTCTTTGCC 104842
Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362
|| || || || | || | || |||||| || | | |||||||| |||
Sbjct 104843 GCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGACAGT 104902
Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422
|||||||| || ||||| || |||||| |||||| ||||||||| | || |||
Sbjct 104903 ATCGACGGGATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGGAGGT 104962
Query 53423 ATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
|||||| | | | | | ||| ||||||| | || | || || || ||||
Sbjct 104963 ATCGGTCTGAATGTCCACAGAA--TCCGTGCCACTGGAGCTTACATTGCTGGCACAAACG 105020
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
| | || | || || || ||||||||||| || ||||||||||| ||| | || ||
Sbjct 105021 GGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGTTG 105080
Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600
|||||||||| |||||| || | ||||| |||||||||||||| |||||||| |
Sbjct 105081 ACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGCTG 105140
Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660
| | | ||||| || || || || ||| || || | || || | ||| || |
Sbjct 105141 ATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTTCGCGCTCGCG 105200
Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719
| || || ||| ||||| |||||||| || ||||||||| | || |||||| | |
Sbjct 105201 ATCTCTTCTAC-GCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGT 105259
Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779
||| ||||||||||| |||||||||||||| || | ||| |||||||| ||
Sbjct 105260 ACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAA 105319
Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833
||| | | | ||| || |||| | || |||| ||| |||| ||
Sbjct 105320 TTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGC------AAGACCATC 105373
Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893
||||| | || | ||| | | |||||| || || ||||| |||| || | |
Sbjct 105374 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 105433
Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||||||||| | |||| ||||| || |||||||||
Sbjct 105434 ATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAAC 105478
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| ||||| ||| || |||||||| | ||| | | || | ||| ||
Sbjct 106251 TCAAGGCTCTTTACAAGACTGTCTGGGAGATCTCCCAGCGTACCATCGTTCAGATGGCTG 106310
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
||||||||||||| | ||||||||||||||| || |||||||| |||| || ||||
Sbjct 106311 CTGATCGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAA 106370
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| ||| |||| | | |||||||| || |||||| ||| || ||||| || |
Sbjct 106371 CTATGGGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGGCA 106430
Query 55908 TGTACTATCTGCGGACC 55924
||||||| || || |||
Sbjct 106431 TGTACTACCTCCGTACC 106447
>seq129
Length=626472
Score = 114 bits (126), Expect = 1e-20
Identities = 185/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| || |||||||| |||| || | || | | |||||| |
Sbjct 326630 GTGAAAATGTAACGAGGACTAGCAGCATCACTGCCTCCCGATAGCCTAGAACCGAAAGAT 326689
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|||||||| |||||| ||||| |||||| | ||| | ||||| || |||| |||
Sbjct 326690 CCACTCGGTTCCAAGCAGTTCACGTTGTTTGAGCCGATGAAGTTCTGGGCCAGACCAACA 326749
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || || | | | || || || ||||| || | ||||| | |||||| ||
Sbjct 326750 ATAGTCATGTGCATGGAAGTTTCGCCGTGATGATAAGCAGCGTGCTCGGACACGTATCCT 326809
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
|| |||| | || ||||||||| || || || ||||| ||| ||| | || |||
Sbjct 326810 GCTAGCTCGACAACTTTCATGTCTTTGGTGAGATTTCGCTTGAAGCAAGCAAACATAACC 326869
Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570
|| || |||| ||||| | |||||
Sbjct 326870 TTTCGTTGACCAGGCTTTAATCCATC 326895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547214878207200
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