Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq145 170 2e-37 seq85 170 2e-37 seq95 145 9e-30 seq58 131 2e-25 >seq145 Length=311005 Score = 170 bits (188), Expect = 2e-37 Identities = 503/768 (65%), Gaps = 13/768 (2%) Strand=Plus/Minus Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||| ||||| ||||| || ||| ||||||||| ||||||||| |||| | Sbjct 105489 ATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAA 105430 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102 ||| | ||||||||| || | || |||||||| || ||||| || | ||||||| Sbjct 105429 GGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATG 105370 Query 81103 ACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCG 81162 |||||| |||||||| ||| | ||||| | || | || || | | ||||| Sbjct 105369 GTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCG 105310 Query 81163 TGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG-GTGCCAGTCGGTGTCGTT 81221 | || |||| || | ||||||||||| ||||||||||| || | || || || Sbjct 105309 TAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTC-TT 105251 Query 81222 CTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCG 81281 ||| ||| ||||||||| || || ||||| || ||| ||| || ||||| |||| Sbjct 105250 CTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCG--AGCG 105193 Query 81282 CG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGC 81339 || | ||||| | || ||||| || | || || || || | || || || ||| Sbjct 105192 CGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGC 105133 Query 81340 CATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAA 81396 |||||||| || || | |||| | || ||| | |||||||||| || || Sbjct 105132 CATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATAT 105073 Query 81397 CGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTA 81456 | ||| || ||| || || || | |||||| | ||||| | || | ||||| || Sbjct 105072 CTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTG 105013 Query 81457 CCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGAC 81516 || | || | || |||| || | || || |||||||| || || | Sbjct 105012 CCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCA 104953 Query 81517 CACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTT 81576 ||| || ||| ||||| || | || || ||||| || ||||| || || | Sbjct 104952 TTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCC 104893 Query 81577 TTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT--TGAGCCGGCATTGAACA 81634 |||||||| | |||||| || || | | | |||| | || |||||| || | Sbjct 104892 TTCATGTCGATCAAGAAGCATGAAGAGAGTT--GTGCTTGTGGTGTGCCGGCGGCAAAGA 104835 Query 81635 GTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGC 81694 | ||||| | |||||| | || || | | ||||| | | || || || | | | Sbjct 104834 GGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCAC 104775 Query 81695 GTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGT 81742 |||||| || ||||||||||||| ||| || | ||| | ||||| Sbjct 104774 TCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGT 104727 >seq85 Length=1171154 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||| ||||| || || || ||||| || ||| | Sbjct 580845 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 580904 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || || |||||||||||||| || || || |||||| Sbjct 580905 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 580964 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| |||||||| ||||||| |||||| | | || ||||| Sbjct 580965 CAGAGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATTATAAC 581024 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||||||||| || | || ||||| ||||| Sbjct 581025 ATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGG 581071 Score = 168 bits (186), Expect = 8e-37 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || |||||||||||||| || |||||||| | Sbjct 581073 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 581132 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||| |||||||| || || || |||||| Sbjct 581133 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 581192 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||| | |||||||||||||||||||| | ||||||| || || | ||| ||||| || Sbjct 581193 CAGAGACTAATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGC-GACTACAA 581251 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || ||||| ||||| || ||||||||||| || || ||| Sbjct 581252 CATCCAGAAGGAGTCTACTCTCCATCTGGTGTTGCGTCTTCGTGGAGGTCAA 581303 Score = 149 bits (164), Expect = 7e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || ||||| ||||| ||||| || | || | ||| | ||| Sbjct 580347 TTACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGA 580406 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 || || || ||||||||||| ||||| || |||||||||||| | || || ||||| | Sbjct 580407 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 580466 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| |||||||| | ||| || || | || || || |||| |||||||| ||||||| Sbjct 580467 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 580526 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||| | |||||||| || || Sbjct 580527 ATCTCGTCCTCCGTCTTCGTGGCGG 580551 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| ||||| |||||||| || ||||| || || || ||| |||| ||| | Sbjct 580629 GTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGAC 580688 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || || ||||||||||| || ||||| || ||||| ||| | || Sbjct 580689 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATC 580748 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||||||||| |||| || ||||| | || || || |||| ||||| Sbjct 580749 TTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGAG 580808 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || | ||| | ||||| || ||||| Sbjct 580809 TCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 580843 Score = 125 bits (138), Expect = 8e-24 Identities = 303/453 (67%), Gaps = 13/453 (3%) Strand=Plus/Minus Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772 ||||||||||| || |||||| ||| || || || ||||| || || |||||| || Sbjct 1031464 TCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTC 1031405 Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 ||| |||||| | || ||||| || |||||||||||||| | || || |||||||| || Sbjct 1031404 TATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCAT 1031345 Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA--- 64889 ||| || ||||| || |||||| || ||||| | ||||| |||| | || Sbjct 1031344 CTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCA 1031285 Query 64890 --GGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAA 64947 | ||| | | || | | | || || | | | |||||| || || || Sbjct 1031284 TCGTCCAAGCAAGCA---AGCAGTCCAA--GACGTTATTACCGAGGCTGTTGAGATCGAG 1031230 Query 64948 AAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATG 65007 | || ||| | |||| || ||||| ||| ||| |||||||| | || | | |||| Sbjct 1031229 CAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATG 1031170 Query 65008 AAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGT-TTGGTATTAAGCCCTA 65066 || || || || || || || || ||||| |||| | ||| | | |||| || || Sbjct 1031169 AAGCAATACATTGAGTTCGTCGCTGATCGTCTGC-TCCTCGCTCTCGGTAACGAGAAGTA 1031111 Query 65067 CTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAA 65126 | || || | || ||||| |||| ||||||| ||| || | || ||||| || Sbjct 1031110 TTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCAA 1031051 Query 65127 CTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159 ||| || || ||| | || | || ||| |||| Sbjct 1031050 CTTCTTCGAGAAGCGTGTCGCCGACTAC-CAAA 1031019 >seq95 Length=967449 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| ||||| || ||||| ||||| |||| || | || | ||| | Sbjct 168776 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCC 168717 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| || ||||| || || || || || || || ||| Sbjct 168716 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 168657 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| |||| |||||||| | ||||| || |||| ||||| || ||||||||| Sbjct 168656 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 168597 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| | ||||| || || || Sbjct 168596 CTAGTCCTCCGTCTCCGTGGAGG 168574 >seq58 Length=1028984 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| ||||| || || ||||| ||||| ||||| || ||||| ||||| |||| || Sbjct 907321 CTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGAT 907380 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || ||||||||||||||||| || || |||||||| ||| | Sbjct 907381 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 907440 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| ||||| |||||||||| || || || | ||||| || | ||||| Sbjct 907441 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 907500 Query 27594 GG 27595 || Sbjct 907501 GG 907502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309230863680