Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq85 98.7 6e-16 >seq85 Length=1171154 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||||||| |||||| || ||||| ||||| || || || || Sbjct 580834 AGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGG 580775 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || ||||| || || || || || | |||||| Sbjct 580774 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCC 580715 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 580714 TTGTCTTGGATCTT 580701 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || || | |||||||||||||| ||||||||| |||||| || ||||| || | || Sbjct 581299 CCTCCACGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 581240 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | || || | || ||||| ||||| |||| | ||| ||||| || | Sbjct 581239 AAAGTG--CGGCCATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTG 581182 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | |||||||| || |||| || | || ||| | |||||||| ||| Sbjct 581181 GGATACCCTCCTTATCCTGGATC-TTGGACTTGACGTTGTCGATTGTGTCAGACGACTCA 581123 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || || || || || || || || || || |||||||| Sbjct 581122 ACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||| ||||| ||||| || ||||| ||||| || Sbjct 580551 CCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAG 580492 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || || || || |||||||| ||||| || || Sbjct 580491 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGA 580432 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 580431 ATGCCCTCCTTGTCTTGGATCTT 580409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728970934212