Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq145 262 5e-65 >seq145 Length=311005 Score = 262 bits (290), Expect = 5e-65 Identities = 1042/1617 (64%), Gaps = 36/1617 (2%) Strand=Plus/Minus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || || ||||| |||| || || | | ||||| || |||||||| Sbjct 106489 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 106430 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || ||||||| |||| || ||| ||||| || || | ||| | | Sbjct 106429 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 106370 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 ||||| || || || |||||||| || || |||||||| || || | |||||| Sbjct 106369 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 106310 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||| | | ||||| || | || ||||| | ||| ||| ||| ||||| Sbjct 106309 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 106250 Query 77009 ATCATCTGGAAGGTTTGT---ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| | |||| || | |||||| |||||||| ||||| | || || ||||| Sbjct 106249 ATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 106190 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | ||| ||| | | | || | | | | | | ||| ||||| | Sbjct 106189 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGAC 106130 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| ||||| |||| ||| || | || | ||| || || || ||||| || | | | Sbjct 106129 TTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACA 106070 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||| || | |||||| ||| |||||||||||||| || || | ||||| Sbjct 106069 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 106010 Query 77246 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 77303 || | ||||| || || | |||||| | ||| || | ||| ||||||||||| Sbjct 106009 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 105952 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | |||| ||| | ||| | ||||||||| || ||| | ||| || || | Sbjct 105951 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 105892 Query 77364 TATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||||| || |||| || | ||| || || || ||| | | ||| || ||| Sbjct 105891 TATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGATGAAGTCAAGGCAGCGTG 105833 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 || || || ||||| |||| ||||||||| || || || || || || | Sbjct 105832 GTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGGG-A 105774 Query 77483 ATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTC 77541 | || || | ||| |||| || | ||||| || |||| | |||||||||| || | Sbjct 105773 GTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGAC 105714 Query 77542 TCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGA 77601 |||| | || || |||| ||| || || || ||||| || || || || | Sbjct 105713 GGAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 105654 Query 77602 GATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC-- 77659 || | || || || | || || | || || |||| || | || ||||| Sbjct 105653 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCAT 105594 Query 77660 TATAACAAACAT--GTTC--AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 | | || | ||| | ||| | ||| || | |||||||| || ||||| | || Sbjct 105593 TTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG 105534 Query 77716 CGTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 || || |||| | |||||| || || ||||| | ||| || || || || Sbjct 105533 -GTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 105475 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 | || || |||||| ||||| | ||||| || || || || || | ||||| || Sbjct 105474 TTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCG 105415 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATC-- 77892 | || | |||| || || | ||| | | ||| | || || | ||| | Sbjct 105414 GTTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCC 105358 Query 77893 --GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATC 77950 |||| ||| || || | ||| || |||||||| || || |||||||| | Sbjct 105357 TTGCCT-TCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 105299 Query 77951 CAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTT 78010 | || ||||| || || |||||||||| || ||| ||||| | || ||| || || Sbjct 105298 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTT 105239 Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATT 78070 ||| |||||||| || ||||||||||| || ||||| || | | | ||| || || Sbjct 105238 CATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTT 105179 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 ||| |||||| ||||| || ||||| | | ||||| |||||||| || || || Sbjct 105178 TCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTA 105119 Query 78131 TATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 || || | | | ||||| || ||||| || ||||| || | ||||||||| ||||| || Sbjct 105118 GATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTT 105059 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACT 78250 |||||| | ||| |||| ||||||||| || | || ||||| |||| ||| ||| Sbjct 105058 GAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGC 104999 Query 78251 TCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATA 78306 |||| | || || || | |||| || || || ||||| || |||| || | Sbjct 104998 TCCAGTGGCACGGATTCT----GTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGA 104943 Query 78307 TTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 | | || ||| || | |||||||| || || || |||||||| ||| |||||| Sbjct 104942 TCATGGCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGT 104886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667375928960