Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq145 266 5e-66 seq85 105 1e-17 >seq145 Length=311005 Score = 266 bits (294), Expect = 5e-66 Identities = 1151/1795 (64%), Gaps = 30/1795 (2%) Strand=Plus/Minus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | ||||| |||||||||| ||| || | | ||||| || |||||||| Sbjct 106489 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 106430 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || ||||||| |||| || ||| ||||| || || | ||| | | Sbjct 106429 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 106370 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 ||||| || || || |||||||| || || |||||||| || || | |||||| Sbjct 106369 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 106310 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||| | | ||||| || | || ||||| | ||| ||| ||| ||||| Sbjct 106309 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 106250 Query 75604 ATCATCTGGAAGATTTGT---ATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| | |||| ||| | |||||| ||||| || ||||| | || || ||||| Sbjct 106249 ATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 106190 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | ||| ||| | | ||| | | | | | | ||| ||||| | Sbjct 106189 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGAC 106130 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| ||||| |||| ||| || | ||| | ||| || || || ||||| || | | | Sbjct 106129 TTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACA 106070 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 || ||| || | |||||| || ||||| |||||||| || || | ||||| Sbjct 106069 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 106010 Query 75841 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 75898 || | ||||| || || | |||||| | ||| || | ||| ||||||||||| Sbjct 106009 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 105952 Query 75899 GATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958 | ||| ||| | ||| | ||||||||| || ||| | ||| || || | Sbjct 105951 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 105892 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG-CAACTCGCCTCTAACGCACCGTA 76017 ||||| |||||||| || | || | || || || || | || || ||| ||| Sbjct 105891 TATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTG 105833 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 || || || ||||| |||| |||| |||| || || || | || || || | Sbjct 105832 GTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGGG-A 105774 Query 76078 ATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136 | || || | || |||| || || ||||| || |||| | |||||||||| || | Sbjct 105773 GTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGAC 105714 Query 76137 TCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGA 76196 |||| | || || |||| |||||| || || || || || || || || | Sbjct 105713 GGAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 105654 Query 76197 GATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC-- 76254 || | || || || | || || | || || |||| || | | ||||| Sbjct 105653 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCAT 105594 Query 76255 TATCACAAACATA--TTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 | | || || || ||||| | ||| || | |||||||| || ||||| | || Sbjct 105593 TTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG 105534 Query 76311 CATTGGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 | || |||| | |||||| ||||| ||||| | ||| || ||||| || Sbjct 105533 G-TGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 105475 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 | || || |||||| ||| || | ||||| || || | || || |||| || || Sbjct 105474 TTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCG 105415 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGC 76489 | || | |||| || || | ||| | | ||| | || || | ||| | | Sbjct 105414 GTTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCC 105358 Query 76490 TTCTCTCTT---TCATA-TTGTG-TATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 || || | || || || | || | | || |||||||| || || |||||||| Sbjct 105357 TTGCCTTCTGCCTCGTACTTCTCATAGAGAGCC--TCAAATTCGTCACCGTAAACATCAG 105300 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 | | ||| || || || || || ||||||| || ||| ||||| | || ||| || | Sbjct 105299 CAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCT 105240 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||| |||||||| || ||||||||||| || ||||| || | | | ||| || | Sbjct 105239 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 105180 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 |||| |||||| ||||| |||||||| | | ||||| |||||||| || || | Sbjct 105179 TTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGT 105120 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | ||||| | | |||| || || ||||| || ||||| || | ||||||||| ||||| | Sbjct 105119 AGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGT 105060 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 | |||||| | ||| |||| ||| ||||| || | || ||||| |||| ||| ||| Sbjct 105059 TGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAG 105000 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 |||| ||||| || | | | || || || ||||| || | || ||||| | Sbjct 104999 CTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCA 104940 Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAA 76964 ||||| || | || || || || || || ||||| || ||| |||||| | | Sbjct 104939 TGGCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCA 104880 Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 || || ||| | ||| || || || || ||| | || ||||| || | Sbjct 104879 AGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGT 104820 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 | || || | || || | || ||||||||| || ||| | || ||||| Sbjct 104819 GTGTAAAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCC 104760 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT 77139 ||||| || ||||| || | ||| | ||| || || || ||||| || |||| Sbjct 104759 CGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTT 104705 >seq85 Length=1171154 Score = 105 bits (116), Expect = 1e-17 Identities = 223/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 || || |||||||| || ||| || | || | | || |||| ||||| || || Sbjct 1031584 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 1031643 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 | ||| || | ||||| || ||||| || || || || || ||||| || || Sbjct 1031644 AGAAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 1031703 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | || |||| | ||| |||||| | ||||| || | ||||| || || ||| Sbjct 1031704 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATT 1031763 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 || ||| ||||| || ||||| | || || | ||| ||| | |||||| | | Sbjct 1031764 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 1031823 Query 47092 AGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 ||| || |||||||| | || ||| || || | ||| | |||||| || ||||||||| Sbjct 1031824 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 1031883 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || |||||||| || || ||||| | ||| || Sbjct 1031884 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 1031915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932938484480