Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq85 116 9e-21 seq95 100 7e-16 >seq85 Length=1171154 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| ||||||||||| || ||||||||||| ||| ||||| | ||||| || Sbjct 581281 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCC 581222 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || || || || ||||||||||| | | ||| || ||||| || || Sbjct 581221 AACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGG 581162 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||| | || | |||| || ||| ||||| ||||||||||| || Sbjct 581161 ATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTT 581102 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| ||||||| |||||| Sbjct 581101 CCAGTCAAAGTCTTGACGAAGATCTGCAT 581073 Score = 109 bits (120), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || ||||| ||||| || |||||||||||||||| | || | Sbjct 580835 GAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCG 580776 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||||||||| | | ||||| || | | ||| || Sbjct 580775 GCCATCTTCGAGTTGCTTT--CCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCC 580718 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| | || | | | || || || ||||| ||| Sbjct 580717 TCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGA 580658 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 || || || ||||| || |||||||| |||| Sbjct 580657 GTGATGGTCTTGCCAGTAAGAGTCTTGACGA 580627 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||||||||| || |||||||| ||||| | || || | ||||| Sbjct 581056 AGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCC 580997 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| || || ||||||||||| | | ||| || ||||| | Sbjct 580996 TCAAGTTGCTTT--CCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGT 580939 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || ||| ||||| | || | | || || || || || || || || | Sbjct 580938 CCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTG 580879 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||| ||||| | |||||| Sbjct 580878 TCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 580845 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||||||||| || || |||||||||||||| | | ||| | || || Sbjct 580537 GAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTC 580478 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| | | ||||||||| | | || || ||||| || Sbjct 580477 CTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 580418 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | |||| ||| ||| || || ||||| || || Sbjct 580417 TTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGT 580358 Query 152072 TTTGCCCGT 152080 ||||| || Sbjct 580357 CTTGCCGGT 580349 >seq95 Length=967449 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||||||||| ||||| || ||||||||||| |||| | || | Sbjct 168582 GAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACG 168641 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || ||||||||||| || | || ||||| | | || || || Sbjct 168642 GCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTC 168701 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | || ||| |||||| || || || Sbjct 168702 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGT 168761 Query 152066 AATAGTTTTGCCCGT 152080 ||| || |||||||| Sbjct 168762 AATTGTCTTGCCCGT 168776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818375534044