Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq85 176 9e-39
seq95 141 2e-28
seq58 125 1e-23
>seq85
Length=1171154
Score = 176 bits (194), Expect = 9e-39
Identities = 178/229 (78%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| |||||||| |||||||| | || || || |||||||| || ||||
Sbjct 581072 ACCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGA 581013
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || ||||||||||| ||||| || || || || || | | || ||||| |
Sbjct 581012 CAAG-GTACGGCCATCCTCAAGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTG 580954
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
| |||||||||||||| |||||||||| || ||| |||| ||||| || || | |||||
Sbjct 580953 GGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGA 580894
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||| ||||| || |||| |||||| ||||| ||||||||
Sbjct 580893 CCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 580845
Score = 168 bits (186), Expect = 1e-36
Identities = 168/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | ||| || || ||||||||||| || |
Sbjct 580844 ACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 580785
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||||||||| || ||||| || ||||| |||||||||||||| || || ||
Sbjct 580784 CAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGG 580725
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||||||||| | || || | ||||| || || || | ||||||
Sbjct 580724 GATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGAC 580665
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|||||||||||| ||||| || || | |||||| ||||
Sbjct 580664 TTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 580627
Score = 156 bits (172), Expect = 9e-33
Identities = 159/205 (78%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || ||||| | || ||| || ||||||||||| || |
Sbjct 580552 ACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGA 580493
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || ||||| || || || || || ||||||||||| || ||||| ||
Sbjct 580492 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGG 580433
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| |||||||||||||||||||| ||| || || | |||||||||||||||| ||||
Sbjct 580432 AATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATAGTGTCCGAAGACTCGA 580374
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| ||||||||||| ||||| || ||
Sbjct 580373 CCTCGAGAGTGATGGTCTTGCCGGT 580349
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || | |||||||| | || || || ||||||||||||||
Sbjct 581300 ACCTCCACGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 581241
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| |||||||||||||| | || || || ||||| || | | || ||||| ||
Sbjct 581240 CAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGG 581181
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||| || |||||||| | || ||| | ||||| ||||| || | || ||
Sbjct 581180 GATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAAC 581121
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| || ||||| || ||||||||||| ||||| ||||||||
Sbjct 581120 TTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073
Score = 105 bits (116), Expect = 1e-17
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264
|| ||| |||| || |||| |||||||||| |||| | | ||| |||||| || ||
Sbjct 1031214 GATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAG 1031155
Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324
||||| ||||||||| | || | || || || ||||||| || || ||| |||
Sbjct 1031154 TTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAAC 1031095
Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384
|| |||| || |||||| ||| || || || || || ||||||||||| ||||||
Sbjct 1031094 CCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGT 1031035
Query 230385 GTCAGCGATTATCAAA 230400
||| ||| || ||||
Sbjct 1031034 GTCGCCGACTACCAAA 1031019
>seq95
Length=967449
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || ||||| | || || || |||||||||||||| |
Sbjct 168573 ACCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 168632
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || |||||||| || ||||| || ||||| ||||| | ||||||||||| ||
Sbjct 168633 GAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGG 168692
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | |||||||| || |||| || ||
Sbjct 168693 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTAC 168752
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
|| || || || ||||| |||||||
Sbjct 168753 CTCTAGGGTAATTGTCTTGCCCGTCA 168778
>seq58
Length=1028984
Score = 125 bits (138), Expect = 1e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
||||| ||||||||||| | ||| || ||||||||||| || || || || || ||||||
Sbjct 907500 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 907441
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|||||||| ||||| || || ||||||||||| |||||||| | || || | ||
Sbjct 907440 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 907381
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || || || | || || ||||| || || ||||| || || | ||| || |||||
Sbjct 907380 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 907322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046737000539256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |