Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq58 154 4e-32 seq85 138 3e-27 seq95 118 3e-21 seq145 98.7 2e-15 >seq58 Length=1028984 Score = 154 bits (170), Expect = 4e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 177922 TCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981 |||| | ||||| ||||||||||| ||||| || || ||||||||||| || ||| | Sbjct 907314 TCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCG 907373 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || || || ||||| ||||| |||||||| || |||||||| || ||||||| Sbjct 907374 ATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGC 907433 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| ||||| |||||||| ||||| | |||||| |||| || ||| Sbjct 907434 AACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACA 907493 Query 178102 TCCAAAAAGAATCAACAC 178119 | ||||| | | ||||| Sbjct 907494 TTCAAAAGGTACGAACAC 907511 >seq85 Length=1171154 Score = 138 bits (152), Expect = 3e-27 Identities = 150/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || ||||| || || || || ||||| ||||| || ||| || || ||||||| Sbjct 580627 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 580686 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||| || ||||| || || |||||||| || |||||||| | | Sbjct 580687 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 580746 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||||||||| || ||||||||||| | || || ||||||| ||| |||| || | Sbjct 580747 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGG 580806 Query 178111 AATCAACACTGCATCTTG 178128 | || || || || |||| Sbjct 580807 AGTCCACTCTCCA-CTTG 580823 >seq95 Length=967449 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || || ||||| ||||| || || || || ||||| |||||||| Sbjct 168776 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCC 168717 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || || || ||||| ||||| || ||||||||||| || Sbjct 168716 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 168657 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||||||||| | || || |||| || ||| |||| || || || || || ||| Sbjct 168656 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 168597 Query 178125 CTTGT 178129 || || Sbjct 168596 CTAGT 168592 >seq145 Length=311005 Score = 98.7 bits (108), Expect = 2e-15 Identities = 186/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGG---CAAATGGCATCTTTGTATGCGATGAAAGGC 214179 |||| ||| ||||| || || || ||| ||| ||||| ||||| |||||||| Sbjct 105483 CCAAGGTTCTTCTGATTACTCTTTCGGTTGCAA---GCATCCTTGTAGAGCATGAAAGGG 105427 Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACC 214239 |||| |||| ||| || | || ||| | ||| || | |||||||| | | | Sbjct 105426 TTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGTC 105367 Query 214240 TTTTTGGCTCTTCCCTCGTTT-TCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTA 214298 || | | ||| ||| | |||||||| ||||| |||| ||||||||| |||||| Sbjct 105366 TTGC-GACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTA 105308 Query 214299 GACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCT 214358 |||||| |||||||||| |||||||||||| | || ||||| ||||| | | Sbjct 105307 AACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTC 105248 Query 214359 GACTCTTTTCATGAAAAGGTCGGAAGTCCA 214388 || | |||||||| || || | | |||| Sbjct 105247 AACACGCTTCATGAAGAGATCTGGAATCCA 105218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728670659816