Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq58 154 4e-32
seq85 138 3e-27
seq95 118 3e-21
seq145 98.7 2e-15
>seq58
Length=1028984
Score = 154 bits (170), Expect = 4e-32
Identities = 153/198 (77%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 177922 TCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981
|||| | ||||| ||||||||||| ||||| || || ||||||||||| || ||| |
Sbjct 907314 TCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCG 907373
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || || || ||||| ||||| |||||||| || |||||||| || |||||||
Sbjct 907374 ATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGC 907433
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | |||||||| ||||| |||||||| ||||| | |||||| |||| || |||
Sbjct 907434 AACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACA 907493
Query 178102 TCCAAAAAGAATCAACAC 178119
| ||||| | | |||||
Sbjct 907494 TTCAAAAGGTACGAACAC 907511
>seq85
Length=1171154
Score = 138 bits (152), Expect = 3e-27
Identities = 150/198 (76%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || ||||| || || || || ||||| ||||| || ||| || || |||||||
Sbjct 580627 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 580686
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||| || ||||| || || |||||||| || |||||||| | |
Sbjct 580687 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 580746
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||||||||| || ||||||||||| | || || ||||||| ||| |||| || |
Sbjct 580747 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGG 580806
Query 178111 AATCAACACTGCATCTTG 178128
| || || || || ||||
Sbjct 580807 AGTCCACTCTCCA-CTTG 580823
>seq95
Length=967449
Score = 118 bits (130), Expect = 3e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || || ||||| ||||| || || || || ||||| ||||||||
Sbjct 168776 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCC 168717
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || || || || ||||| ||||| || ||||||||||| ||
Sbjct 168716 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 168657
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||||||||||| | || || |||| || ||| |||| || || || || || |||
Sbjct 168656 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 168597
Query 178125 CTTGT 178129
|| ||
Sbjct 168596 CTAGT 168592
>seq145
Length=311005
Score = 98.7 bits (108), Expect = 2e-15
Identities = 186/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Minus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGG---CAAATGGCATCTTTGTATGCGATGAAAGGC 214179
|||| ||| ||||| || || || ||| ||| ||||| ||||| ||||||||
Sbjct 105483 CCAAGGTTCTTCTGATTACTCTTTCGGTTGCAA---GCATCCTTGTAGAGCATGAAAGGG 105427
Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACC 214239
|||| |||| ||| || | || ||| | ||| || | |||||||| | | |
Sbjct 105426 TTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGTC 105367
Query 214240 TTTTTGGCTCTTCCCTCGTTT-TCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTA 214298
|| | | ||| ||| | |||||||| ||||| |||| ||||||||| ||||||
Sbjct 105366 TTGC-GACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTA 105308
Query 214299 GACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCT 214358
|||||| |||||||||| |||||||||||| | || ||||| ||||| | |
Sbjct 105307 AACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTC 105248
Query 214359 GACTCTTTTCATGAAAAGGTCGGAAGTCCA 214388
|| | |||||||| || || | | ||||
Sbjct 105247 AACACGCTTCATGAAGAGATCTGGAATCCA 105218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203728670659816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |