Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq868 123 5e-23 >seq868 Length=196860 Score = 123 bits (136), Expect = 5e-23 Identities = 307/462 (66%), Gaps = 8/462 (2%) Strand=Plus/Minus Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCA 230239 |||||||||| |||| | |||||| ||||| | || ||||| ||| | | | Sbjct 110445 AGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTA 110386 Query 230240 TCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCA 230299 | || ||| || ||| ||| ||||||| || || | || |||||| ||||| Sbjct 110385 TATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCT 110326 Query 230300 GTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC 230358 || ||||| |||||||| || | | || | | || ||| || | | |||| Sbjct 110325 CCCGTGACGAAGGTCTCCA-CACCGACTTTGCCTGCCTCTTGTTCTCCCACTT---GAAC 110270 Query 230359 AAGCTACCATTCGAGA---CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415 | | ||| | || | ||| || | | ||||| || || ||||| | ||| | Sbjct 110269 CATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAA 110210 Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||| | ||| ||| |||| ||| ||| | ||||||||||||| | ||| Sbjct 110209 GAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGAAG 110150 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 || ||||| || ||||| || || || | | | || || ||| ||||||| ||| Sbjct 110149 CAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTAC 110090 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 || || ||||| |||| ||||||||| ||| || ||| || |||||||||||| Sbjct 110089 AAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAACTTC 110030 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||| ||||||||| ||||| || | ||||||| ||| Sbjct 110029 TTCGAGAAGCGTGTCGCCGACTACCAAAAATCTGGTGTTATG 109988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057795131321900