Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq868 123 5e-23
>seq868
Length=196860
Score = 123 bits (136), Expect = 5e-23
Identities = 307/462 (66%), Gaps = 8/462 (2%)
Strand=Plus/Minus
Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCA 230239
|||||||||| |||| | |||||| ||||| | || ||||| ||| | | |
Sbjct 110445 AGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTA 110386
Query 230240 TCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCA 230299
| || ||| || ||| ||| ||||||| || || | || |||||| |||||
Sbjct 110385 TATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCT 110326
Query 230300 GTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC 230358
|| ||||| |||||||| || | | || | | || ||| || | | ||||
Sbjct 110325 CCCGTGACGAAGGTCTCCA-CACCGACTTTGCCTGCCTCTTGTTCTCCCACTT---GAAC 110270
Query 230359 AAGCTACCATTCGAGA---CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415
| | ||| | || | ||| || | | ||||| || || ||||| | ||| |
Sbjct 110269 CATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAA 110210
Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475
|||||| | ||| ||| |||| ||| ||| | ||||||||||||| | |||
Sbjct 110209 GAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGAAG 110150
Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535
|| ||||| || ||||| || || || | | | || || ||| ||||||| |||
Sbjct 110149 CAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTAC 110090
Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595
|| || ||||| |||| ||||||||| ||| || ||| || ||||||||||||
Sbjct 110089 AAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAACTTC 110030
Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||||| ||||||||| ||||| || | ||||||| |||
Sbjct 110029 TTCGAGAAGCGTGTCGCCGACTACCAAAAATCTGGTGTTATG 109988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057795131321900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |