Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq868 102 8e-17 >seq868 Length=196860 Score = 102 bits (112), Expect = 8e-17 Identities = 297/450 (66%), Gaps = 12/450 (3%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | ||||||| || || || || ||||||||||| || ||||| | | Sbjct 109991 AACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAG 110050 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAG-CTGAAAATATCTTAGAGTACCCCA 16019 || || || |||||||| ||||| || || | | || |||| ||| || || | Sbjct 110051 GGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAATA-CTTCTCGTTACCGA 110109 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | | | | | ||| || || || || || ||||| ||| || | || | Sbjct 110110 GAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCA 110169 Query 16080 TTCCTATAAGTCGTACCGG-AAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 | || | ||| | || || |||||| | || || || | ||| || ||| |||| || Sbjct 110170 TGCCGAGAAGA-GCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCC 110228 Query 16139 TCTTTAATGATATCGGTGGCT-CGTGTTTCA---GACGGTGTATGGTTTAGGTGTTTAAA 16194 || |||| | || | || | || || |||| |||||| | ||| || Sbjct 110229 TCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACG----ATGGTTCAAGTGGGAGAA 110284 Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254 || || || || |||||| || || |||||||| | | ||| || |||||||| || Sbjct 110285 CAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAA 110344 Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314 || | |||||||| || || ||||| ||||||||||| | || ||||| || || Sbjct 110345 GGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGA 110404 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGC 16344 ||||| ||||||||||||| ||||| || Sbjct 110405 GAAGAAGATACCCTCAACAGCGGCAAAGGC 110434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400783591600