Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq868 102 8e-17
>seq868
Length=196860
Score = 102 bits (112), Expect = 8e-17
Identities = 297/450 (66%), Gaps = 12/450 (3%)
Strand=Plus/Plus
Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960
|||||| | ||||||| || || || || ||||||||||| || ||||| | |
Sbjct 109991 AACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAG 110050
Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAG-CTGAAAATATCTTAGAGTACCCCA 16019
|| || || |||||||| ||||| || || | | || |||| ||| || || |
Sbjct 110051 GGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAATA-CTTCTCGTTACCGA 110109
Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079
| | | | | ||| || || || || || ||||| ||| || | || |
Sbjct 110110 GAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCA 110169
Query 16080 TTCCTATAAGTCGTACCGG-AAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138
| || | ||| | || || |||||| | || || || | ||| || ||| |||| ||
Sbjct 110170 TGCCGAGAAGA-GCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCC 110228
Query 16139 TCTTTAATGATATCGGTGGCT-CGTGTTTCA---GACGGTGTATGGTTTAGGTGTTTAAA 16194
|| |||| | || | || | || || |||| |||||| | ||| ||
Sbjct 110229 TCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACG----ATGGTTCAAGTGGGAGAA 110284
Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254
|| || || || |||||| || || |||||||| | | ||| || |||||||| ||
Sbjct 110285 CAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAA 110344
Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314
|| | |||||||| || || ||||| ||||||||||| | || ||||| || ||
Sbjct 110345 GGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGA 110404
Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGC 16344
||||| ||||||||||||| ||||| ||
Sbjct 110405 GAAGAAGATACCCTCAACAGCGGCAAAGGC 110434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511400783591600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |