Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 192 7e-44
seq868 87.8 2e-12
>seq1094
Length=98106
Score = 192 bits (212), Expect = 7e-44
Identities = 1188/1887 (63%), Gaps = 53/1887 (3%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
|||||||||||||||||||| || | | ||||| || |||||||| || || || |||
Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| | |||| || || |||||||| || | ||| | | ||||| ||
Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 30483
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
||||| ||||| ||||| || ||||||||||| || | || |||||||| | | |
Sbjct 30482 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 30423
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047
|| || || | || ||||| | ||| || |||| ||| ||||| | ||||
Sbjct 30422 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 30363
Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
|| | ||| || || || || ||||| | || || | ||||| || | ||| |
Sbjct 30362 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 30303
Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164
|| | | ||| | | | | | | || ||||| ||||| ||||| |||
Sbjct 30302 CAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACCA 30243
Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224
| ||| || | || | ||| || || || || || || | | |||| || ||
Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183
Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284
| |||||| || ||||| |||||||| || || | ||||| || | |||||||
Sbjct 30182 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 30123
Query 53285 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 53342
| || | |||||| | || | |||| |||| | ||||||||| | ||| |||
Sbjct 30122 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 30065
Query 53343 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 53398
||| || || || | |||| || ||| | ||||| |||
Sbjct 30064 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 30009
Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457
|| | || | || || || || || ||| | || || ||| ||| || |||||
Sbjct 30008 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 29950
Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517
|||||||||| |||| |||| || || || | || ||||| | | |||||
Sbjct 29949 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGG-GAGTCGAAGAG 29891
Query 53518 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576
| || | || || | || || ||||||| | | |||||||| || | ||| |
Sbjct 29890 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 29832
Query 53577 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635
|| | || || |||| ||| || || || || || || || || || | ||| |
Sbjct 29831 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 29772
Query 53636 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT------ 53689
|| | || | | ||||| | || || |||| || | ||||| ||
Sbjct 29771 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 29712
Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749
|| | | | |||| ||| |||| |||||||| || ||||| | || | | ||
Sbjct 29711 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 29653
Query 53750 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808
|||| | |||||| ||||| ||||| | |||||| || | || | |||||
Sbjct 29652 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 29593
Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868
||||||| ||| || |||||||| || || ||||| || | || || || | || |
Sbjct 29592 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 29533
Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTC 53925
|| | || | | ||| | | |||| | || | ||| | ||| |||
Sbjct 29532 CTCGAGGATGGAGTACCAAAGCTTCTGGGCCT---TGATGGTCTTGCGACCCTTGCCTTC 29476
Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985
| ||||| ||| | ||||| ||||| || |||||| | | || ||
Sbjct 29475 TGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 29416
Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAA 54042
|| || | || ||||||| | ||| | | | ||| |||| || || ||||| ||
Sbjct 29415 GCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGAA 29359
Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102
|||||| |||||||| ||||| || ||||| | | | | |||||| |||||
Sbjct 29358 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTG 29299
Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162
|||||| | ||||| |||||| | | | ||||| ||||| || || | ||| || |
Sbjct 29298 GTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGC 29239
Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222
| | | ||||| || || ||||| ||||| || | ||||| || ||||| || ||||
Sbjct 29238 GAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAAC 29179
Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282
|| | ||| |||| |||||| ||||| || || || || | || || |||| |
Sbjct 29178 TCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGT 29119
Query 54283 GGCACGAATATT----ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
|||||| || | || ||| ||||| || || || || | || ||||| | |
Sbjct 29118 GGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGG 29063
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
| || || | ||||| || || || || ||||| || ||| |||||| | | |
Sbjct 29062 CACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 29003
Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458
| || ||| | ||| | || || || ||| | ||| ||||| ||||| |
Sbjct 29002 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 28943
Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518
|||| | || || | | |||||| ||||||||||| || ||||| |
Sbjct 28942 TAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGT 28883
Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578
|||| || || || || | ||| | |||||| || || | ||| | |||||| | |
Sbjct 28882 GAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGA 28823
Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 54636
|| | ||| ||| | || | ||| || || ||||| || | ||| ||||| ||
Sbjct 28822 GACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TC 28765
Query 54637 TCGTTCGTAAATAATAACTGAGTTGAG 54663
|| || || | ||| | ||||||||
Sbjct 28764 CCGATCATAGACAATGGCAGAGTTGAG 28738
>seq868
Length=196860
Score = 87.8 bits (96), Expect = 2e-12
Identities = 219/332 (66%), Gaps = 3/332 (1%)
Strand=Plus/Plus
Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416
||||| |||||||| || |||||| | || | || |||| ||||| || ||
Sbjct 110567 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 110626
Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476
| ||| || | || || || ||||| || || ||||| || |||||||| ||
Sbjct 110627 AGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 110686
Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536
| |||||| | | ||| || ||| | ||||| || | || || || || |||
Sbjct 110687 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTAACAATT 110746
Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596
|||||| || || || || || | || || | ||| ||| | || || |
Sbjct 110747 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 110806
Query 24597 AGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653
||| || ||||| || | || ||| || || | ||| | |||||| | ||||| |||
Sbjct 110807 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 110866
Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGAT 24685
|| ||||||||||| || ||||| | ||||||
Sbjct 110867 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 110898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593705792162400
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