Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq868 170 2e-37 seq829 113 5e-20 seq762 100 3e-16 seq1384 87.8 2e-12 >seq868 Length=196860 Score = 170 bits (188), Expect = 2e-37 Identities = 553/858 (64%), Gaps = 73/858 (9%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||| || | || ||| Sbjct 110898 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 110839 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | | || ||| | ||| | | || || Sbjct 110838 TCCAAGGATCTCCA-CGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTC 110780 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || ||||| || ||||| || || |||||||| || | ||||| Sbjct 110779 CCACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTTAACGAGAACCTCCTGGAGCG 110720 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| || || |||| ||||| | ||||| || ||||||||||| || || ||| | Sbjct 110719 ATTCAGCGGAG-AGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATGA 110661 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930 |||||||| | ||||| || | || || ||||||||||| ||| | | || Sbjct 110660 TGGAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACAT------TAAGG 110607 Query 116931 AGGAG-----AAGCTCC-GTTTGTTGAACGCCATCGAGAC------GATGCCGTGCGTCA 116978 || || | || || | |||| || || |||||||| | |||| |||||| Sbjct 110606 AGCAGGCTCAACGCACCTATCTGTTCAATGCTATCGAGACCAGTAAGTTGCCTCGCGTCA 110547 Query 116979 -------------------------------------------AAG-AGAAGGCCGAGTG 116994 ||| |||||||||| || Sbjct 110546 TCAGCACAGTGCCATATTCTAACACGATCTAGTTCCCTGCATCAAGAAGAAGGCCGACTG 110487 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||| | | |||||| | || || | | |||| |||| || || ||||| || Sbjct 110486 GGCCGTAAGATGGATCCAAGACAAGGACTCTACATTCGCTCAGCGTCTCGTTGCCTTTGC 110427 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || || ||||| ||||||| || || |||||| | ||||| ||| | ||||| || Sbjct 110426 CGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGGTTGAAGAAGCG 110367 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 || || ||||| || || || ||| |||||||||||||||| | ||||| ||||| || Sbjct 110366 TGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCA 110307 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGC-G 117233 |||||||||||| | ||||| || ||| || || || ||| || || | Sbjct 110306 CACCGACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCATCGTCCAAGC-AAGCAAGCAG 110248 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC-TG 117292 || || | | ||||| || || | |||||||| ||| | || || || | | Sbjct 110247 TCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTC 110188 Query 117293 CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCC 117352 || |||| ||| || || | || | |||| ||||||||| ||||||||||| Sbjct 110187 CCTGTGC-TCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCT 110129 Query 117353 GACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGAC 117412 || | ||||| |||| || | || ||| | ||||| | ||||||| | ||| Sbjct 110128 GATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGAC 110069 Query 117413 TTTATGAACCTCATCTCC 117430 |||||| | ||||||| Sbjct 110068 TTTATGGAGAACATCTCC 110051 >seq829 Length=133551 Score = 113 bits (124), Expect = 5e-20 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 |||||||| || || ||| | || || || | |||| | | | |||| ||||| Sbjct 64945 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACG-TCAAGTC 64887 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| |||||||| ||| | ||||| ||||| ||||||| ||| ||||| Sbjct 64886 CAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAA 64827 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || || | || |||||| |||||||||||||||||||||| | || || || Sbjct 64826 GCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCA 64767 Query 40893 TCTAGT 40898 |||||| Sbjct 64766 TCTAGT 64761 >seq762 Length=84765 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| |||||||| |||| ||||| | | |||| | | | ||||| Sbjct 19529 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 19588 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| |||||||| ||| | |||||||| || | |||| ||| ||||| Sbjct 19589 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 19648 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| ||||| ||| || ||||||||||||||||| | || || ||| Sbjct 19649 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCAT 19708 Query 40894 CTAGT 40898 || || Sbjct 19709 CTCGT 19713 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| |||||||| |||| |||||| | |||| | | | Sbjct 19807 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 19866 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | || || ||||||||||| | || |||||||| | | Sbjct 19867 ACAATGTCAAGTCGAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 19926 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || || || || || | |||||||| ||| ||||||||||| |||| Sbjct 19927 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGG 19986 Query 40880 AGGCCACGCTGCA 40892 || |||| || || Sbjct 19987 AGTCCACTCTCCA 19999 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||||| |||| |||||| | | Sbjct 20025 ATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 20084 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| ||| || | ||||| ||||| ||||| | ||||| Sbjct 20085 GATACTATTGATAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 20143 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||| | ||| || || ||| |||| || | || ||| | || || || Sbjct 20144 GCAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAA 20203 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 20204 CATCCAGAAGGAGTCTACTCTCCATCTGGT 20233 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || ||||| ||||| | |||||||| |||| || | || || || ||| |||| Sbjct 20346 GATAAGGAGGGTATCCCACCCGACCAGCAGAGACTTATTTTTGCTGGTAAGCAGTTGGAG 20405 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| | | |||||||||||||||||||||| | || || ||||| |||||| Sbjct 20406 GATGGCCGCACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCATCTGGTGTTG 20465 Query 40903 CG 40904 || Sbjct 20466 CG 20467 >seq1384 Length=59147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757 ||||| ||||| ||||| || || || || ||| |||| || || || |||| | | | Sbjct 42690 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 42749 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | || | ||||| || || | ||||| ||||| || ||| | ||||||||||| | Sbjct 42750 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGCAACGTTT 42808 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || ||||| || || | || || || |||||||||||| || || Sbjct 42809 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 42868 Query 40878 GG 40879 || Sbjct 42869 GG 42870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515205482288800