Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq868 170 2e-37
seq829 113 5e-20
seq762 100 3e-16
seq1384 87.8 2e-12
>seq868
Length=196860
Score = 170 bits (188), Expect = 2e-37
Identities = 553/858 (64%), Gaps = 73/858 (9%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||||| ||| || | || |||
Sbjct 110898 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 110839
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | | || ||| | ||| | | || ||
Sbjct 110838 TCCAAGGATCTCCA-CGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTC 110780
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || ||||| || ||||| || || |||||||| || | |||||
Sbjct 110779 CCACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTTAACGAGAACCTCCTGGAGCG 110720
Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||| || || |||| ||||| | ||||| || ||||||||||| || || ||| |
Sbjct 110719 ATTCAGCGGAG-AGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATGA 110661
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930
|||||||| | ||||| || | || || ||||||||||| ||| | | ||
Sbjct 110660 TGGAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACAT------TAAGG 110607
Query 116931 AGGAG-----AAGCTCC-GTTTGTTGAACGCCATCGAGAC------GATGCCGTGCGTCA 116978
|| || | || || | |||| || || |||||||| | |||| ||||||
Sbjct 110606 AGCAGGCTCAACGCACCTATCTGTTCAATGCTATCGAGACCAGTAAGTTGCCTCGCGTCA 110547
Query 116979 -------------------------------------------AAG-AGAAGGCCGAGTG 116994
||| |||||||||| ||
Sbjct 110546 TCAGCACAGTGCCATATTCTAACACGATCTAGTTCCCTGCATCAAGAAGAAGGCCGACTG 110487
Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054
||| | | |||||| | || || | | |||| |||| || || ||||| ||
Sbjct 110486 GGCCGTAAGATGGATCCAAGACAAGGACTCTACATTCGCTCAGCGTCTCGTTGCCTTTGC 110427
Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114
|| || ||||| ||||||| || || |||||| | ||||| ||| | ||||| ||
Sbjct 110426 CGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGGTTGAAGAAGCG 110367
Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174
|| || ||||| || || || ||| |||||||||||||||| | ||||| ||||| ||
Sbjct 110366 TGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCA 110307
Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGC-G 117233
|||||||||||| | ||||| || ||| || || || ||| || || |
Sbjct 110306 CACCGACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCATCGTCCAAGC-AAGCAAGCAG 110248
Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC-TG 117292
|| || | | ||||| || || | |||||||| ||| | || || || | |
Sbjct 110247 TCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTC 110188
Query 117293 CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCC 117352
|| |||| ||| || || | || | |||| ||||||||| |||||||||||
Sbjct 110187 CCTGTGC-TCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCT 110129
Query 117353 GACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGAC 117412
|| | ||||| |||| || | || ||| | ||||| | ||||||| | |||
Sbjct 110128 GATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGAC 110069
Query 117413 TTTATGAACCTCATCTCC 117430
|||||| | |||||||
Sbjct 110068 TTTATGGAGAACATCTCC 110051
>seq829
Length=133551
Score = 113 bits (124), Expect = 5e-20
Identities = 138/186 (74%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|||||||| || || ||| | || || || | |||| | | | |||| |||||
Sbjct 64945 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACG-TCAAGTC 64887
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| |||||||| ||| | ||||| ||||| ||||||| ||| |||||
Sbjct 64886 CAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAA 64827
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || || | || |||||| |||||||||||||||||||||| | || || ||
Sbjct 64826 GCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCA 64767
Query 40893 TCTAGT 40898
||||||
Sbjct 64766 TCTAGT 64761
>seq762
Length=84765
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| |||||||| |||| ||||| | | |||| | | | |||||
Sbjct 19529 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 19588
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | ||||| |||||||| ||| | |||||||| || | |||| ||| |||||
Sbjct 19589 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 19648
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||| ||||| ||| || ||||||||||||||||| | || || |||
Sbjct 19649 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCAT 19708
Query 40894 CTAGT 40898
|| ||
Sbjct 19709 CTCGT 19713
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || || || ||||| |||||||| |||| |||||| | |||| | | |
Sbjct 19807 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 19866
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | || || ||||||||||| | || |||||||| | |
Sbjct 19867 ACAATGTCAAGTCGAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 19926
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| ||| || || || || || || | |||||||| ||| ||||||||||| ||||
Sbjct 19927 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGG 19986
Query 40880 AGGCCACGCTGCA 40892
|| |||| || ||
Sbjct 19987 AGTCCACTCTCCA 19999
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || || || || ||||| |||| |||||| | |
Sbjct 20025 ATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 20084
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| ||||| ||| || | ||||| ||||| ||||| | |||||
Sbjct 20085 GATACTATTGATAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 20143
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||||| | ||| || || ||| |||| || | || ||| | || || ||
Sbjct 20144 GCAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAA 20203
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || ||||| ||
Sbjct 20204 CATCCAGAAGGAGTCTACTCTCCATCTGGT 20233
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
|| || ||||| ||||| | |||||||| |||| || | || || || ||| ||||
Sbjct 20346 GATAAGGAGGGTATCCCACCCGACCAGCAGAGACTTATTTTTGCTGGTAAGCAGTTGGAG 20405
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| | | |||||||||||||||||||||| | || || ||||| ||||||
Sbjct 20406 GATGGCCGCACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCATCTGGTGTTG 20465
Query 40903 CG 40904
||
Sbjct 20466 CG 20467
>seq1384
Length=59147
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757
||||| ||||| ||||| || || || || ||| |||| || || || |||| | | |
Sbjct 42690 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 42749
Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| || | ||||| || || | ||||| ||||| || ||| | ||||||||||| |
Sbjct 42750 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGCAACGTTT 42808
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| || || ||||| || || | || || || |||||||||||| || ||
Sbjct 42809 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 42868
Query 40878 GG 40879
||
Sbjct 42869 GG 42870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515205482288800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |