Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq762 120 3e-22 seq1384 98.7 9e-16 >seq762 Length=84765 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| |||||||||||| || ||||| ||| ||| Sbjct 20005 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCG 19946 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| ||| |||| | ||| |||||||||||||| ||||||||||| ||| Sbjct 19945 AGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCTTGG 19886 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||| || | || | ||||| |||| || | || || Sbjct 19885 ATCTTCGACTTGACATTGTCGATGGTATCGGATGAT-TCGACTTCGAGAGTGATGGTCTT 19827 Query 118709 GCCGGTCAGAGTTTTTAC 118726 ||| || ||||| || || Sbjct 19826 GCCAGTAAGAGTCTTGAC 19809 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| |||||||| || || ||||| ||||| || || || |||||| Sbjct 20233 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCCTCC 20174 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| ||||||||| | ||||| | |||||| ||||| || || ||||||||||| Sbjct 20173 AACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 20114 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | || || | || | |||||||||| || | || || Sbjct 20113 ATCTTTGACTTGACGTTATCAATAGTATCAGATGAT-TCGACCTCGAGTGTGATTGTCTT 20055 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || ||||||||||| Sbjct 20054 TCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || ||||||||||| | |||||| ||||||||||| || ||| Sbjct 19701 GTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 19642 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||| ||||| || ||||||||||||||| || || || Sbjct 19641 GCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 19582 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| ||||||| ||||||||||| || | || |||||||| Sbjct 19581 ACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 19529 >seq1384 Length=59147 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 |||||||||||||| ||| | ||| || |||||||||||| ||||||||| |||| Sbjct 42868 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 42809 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||| ||||| || || || || ||||||||||| || || || || | || Sbjct 42808 AAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 42749 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | || || | | ||| ||||||| ||| | || || ||||| |||||||| || || Sbjct 42748 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 42690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819138033960