Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1076 96.9 7e-15
seq1094 89.7 1e-12
>seq1076
Length=56894
Score = 96.9 bits (106), Expect = 7e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
||||||||| | || || |||| ||||| || |||||||| || || |||||||| ||
Sbjct 48930 CTTCCTCATCTCCTCCTCTACGGGCCTCCTGGTACAGGCAAAACCTCCACCATCCTCGCC 48989
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120
|| ||||||| | | ||| ||||||| | | || ||||| || || |||
Sbjct 48990 CTCGCCCGAAAAATCTACGGCTCCAAGAACATGCGCCAAATGGTTCTCGAACTCAATGCT 49049
Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171
|||||||| || || | ||||| || ||||| |||||||||| ||| ||
Sbjct 49050 TCTGACGACCGTGGCATCGACGTTGTGCGCGAACAGATCAAGACGTTCGCC 49100
>seq1094
Length=98106
Score = 89.7 bits (98), Expect = 1e-12
Identities = 590/936 (63%), Gaps = 32/936 (3%)
Strand=Plus/Plus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
||||| | ||| | | ||||| ||||| || || |||| ||| || || ||| |
Sbjct 28765 GATTTCAACTACCAATACTTTGGATTCAAGACTCTTGAGAGATCATACCTTCTCCGTCTC 28824
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
|| |||||||| | ||||| || |||||| | ||| ||||||||||||| ||||||
Sbjct 28825 GAGGGCAAGATTGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCAC 28884
Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG---AGTGAACGCTGGATG 248985
|||||| || ||||| | ||||||| |||| ||| || | || |
Sbjct 28885 GGGGATGATATTGAGAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACT---TT 28941
Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTG 249044
||||| || | || || ||||| |||||| || | ||| | || || || ||
Sbjct 28942 ACACACGCGTCTCCAACCCTCTTTGCCGCCGGCACACCACAAGCA-CAACTCTCTTCATG 29000
Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104
||| | | | |||| | || ||| | ||||||| ||||| || || || | ||||
Sbjct 29001 CTTCTTGATCGACATGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCA---AGAC 29057
Query 249105 ---GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161
|| | ||| || || || || || |||||||| ||| || ||||| ||
Sbjct 29058 TTGTGCCATGATCTCCAAGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGC 29117
Query 249162 GAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCG 249221
| || | ||||| || ||||| ||| | | ||||| || || | || ||
Sbjct 29118 CACTGGAGCTTACATTGCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCG 29177
Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTC 249275
| || | ||| ||||| | | |||||| || ||||| || |
Sbjct 29178 AGTTTTCAACAACACAGCCAGATATGTTGACCAGGGTGGAAATAAGCGCC---CTGGTGC 29234
Query 249276 GTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAA 249335
||||| || || | || |||||||| ||| | || |||||||| || | | |||
Sbjct 29235 TTTCGCGATCTACCTCGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCAGAAA 29294
Query 249336 GAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGA 249395
|||| |||| || ||| | | || || || |||||||||| || ||| | | ||
Sbjct 29295 GAACCACGGAAAGGAGGAAGTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGA 29354
Query 249396 CTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CG 249454
| |||||| || || || | || ||||| || | | || ||| |
Sbjct 29355 TCTCTTCATGAAGCGTGTTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTG 29414
Query 249455 CCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAAT 249514
|||||| | | | ||| | |||| | ||| || || |||| |||| |||||
Sbjct 29415 CCCCGGTCTTGCT-GATGTTTACGGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGG 29473
Query 249515 CCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCTTTTTGCGAAGGTGGTGGAGT 249571
| | |||| | ||||||| |||||||| | || |||| | | |||
Sbjct 29474 CAGAAGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGG 29533
Query 249572 CCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630
| || | ||||| || || | | || | | ||| || || |||||| ||||||
Sbjct 29534 CGCAAACCGAGAC-CGGAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGT 29592
Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATAC 249690
|| || | | ||||||||||||||| || |||||||| ||||| | || |||||
Sbjct 29593 AATCAGAAGAACCTTGGTACCATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATAC 29652
Query 249691 TCGTCCA-AGGAGGAGATTGCCGTCTGCAACCTGGC 249725
| || || || ||| | || || || ||| ||||
Sbjct 29653 T-GTGCACCTGACGAGGTCGCTGTTTGTAACTTGGC 29687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073737096243840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |