Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 304 1e-77
seq868 167 2e-36
seq762 120 3e-22
>seq1094
Length=98106
Score = 304 bits (336), Expect = 1e-77
Identities = 585/860 (68%), Gaps = 2/860 (0%)
Strand=Plus/Minus
Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177
|||| || || ||||| ||||| | |||||||||||||||| | || | || ||||||
Sbjct 29599 TCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 29540
Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TG 23236
|||| ||||| ||| | ||| | |||| || | | ||| || || ||
Sbjct 29539 TTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGA-TGGTCTTGCGACCCTTG 29481
Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296
|||||| |||||||||| | || | || ||||||||| |||||||| || || ||
Sbjct 29480 CCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGA 29421
Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356
||||| | | | || ||||| || |||| | | || ||||| || ||||
Sbjct 29420 CCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATG 29361
Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416
|| ||||| || ||||||||||||||||| || ||||| ||||| || ||||| || |||
Sbjct 29360 AAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCG 29301
Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476
||||||| | | ||| | || || || || || || ||||| ||||||||||| |
Sbjct 29300 TGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATC 29241
Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536
|| || || || || | |||||| || ||||| || || || | ||| ||||||||| |
Sbjct 29240 GCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAA 29181
Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596
|||| ||||| || || | ||||||||| ||| | ||| || | | ||
Sbjct 29180 ACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCA 29121
Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656
| || || | |||| || | | ||| || ||||| | || || ||||| ||
Sbjct 29120 GTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCA 29061
Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716
|| || ||||| ||||| || || ||||| |||||||| || | ||| ||||||
Sbjct 29060 CAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAG 29001
Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776
|| ||||| | ||| |||| || || |||| | || || || || ||||| |||
Sbjct 29000 CATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTA 28941
Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836
||||| | ||||| | |||||| || ||||| || ||||| || || |||||
Sbjct 28940 AAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGA 28881
Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATT 23896
||||||| || || | ||| ||||||| ||| || | ||| | | ||| | |
Sbjct 28880 ATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGA 28821
Query 23897 TTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGA 23956
|| || ||||| | | | || || |||||||| || | ||||| || || |||
Sbjct 28820 CGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATCCCGA 28761
Query 23957 TCGTGCACTATGGCCGAATT 23976
|| | || ||||| || ||
Sbjct 28760 TCATAGACAATGGCAGAGTT 28741
Score = 96.9 bits (106), Expect = 3e-15
Identities = 374/583 (64%), Gaps = 11/583 (2%)
Strand=Plus/Minus
Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202
|||| || || || |||||||| ||||||||||||| |||||| | || || ||
Sbjct 30574 TGGTACGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATAC 30515
Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262
||| | || || | | || | ||||| | || | ||| || ||| ||||
Sbjct 30514 TCGTGATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGA 30455
Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322
| || || || ||||| || ||||| | | | |||||| || || ||||| || |
Sbjct 30454 TGAAGGCACCACGATCAGCAGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAG 30395
Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCC--TCTGGACGGACCCGTT 22380
||||||| || | |||| || || || ||| | | | |||| ||| ||
Sbjct 30394 TCTTGTAAAGAGCCTTGATATCGGCAGGAAT--ATTAGGGACATTTTGGATGGAACCTCC 30337
Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440
|| | ||||| || || || |||| ||| | ||| || || | ||| ||
Sbjct 30336 ATCGGCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTT 30277
Query 22441 GACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500
| | | |||| || ||||| || || || | |||||| || || ||| |||||
Sbjct 30276 CAATAACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTT 30217
Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560
||||||| | || |||||| | || ||| || || || ||| ||| || || ||
Sbjct 30216 GGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGG 30157
Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGC 22618
||| || || | || | ||| | | ||||||| ||| |||| ||| |
Sbjct 30156 CATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTG--ATTTGTTGCTTCAAG 30099
Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678
| | ||||||||| ||||||| || || || || ||||||||||||||| | | |
Sbjct 30098 GTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCTT---CCACATATCGTATTGGAGCTCT 30042
Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCAT 22721
|| | || ||| |||||||| || ||||| | |||||
Sbjct 30041 CCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCAT 29999
>seq868
Length=196860
Score = 167 bits (184), Expect = 2e-36
Identities = 586/916 (64%), Gaps = 63/916 (7%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| |||||||| || || || ||||||| ||||||| | || |||
Sbjct 110898 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 110839
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| |||||||| ||| ||| | | ||||| || ||||||| | ||| |
Sbjct 110838 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 110779
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| ||||| || || |||||||||||||| | | || ||
Sbjct 110778 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTTAACGAGAACCTCCTGGAGCGA 110719
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||| || || || | ||||| | ||||| ||||| || ||| | ||
Sbjct 110718 TTCAGCGGAGAGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATGATG 110659
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865
|| ||| | || || || | || || || |||||||| || ||| | ||||| ||
Sbjct 110658 GAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATTAAGGAGCAGGCT 110599
Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA------TGCC-CGCG--ATC----- 57911
| | || || |||||||| || ||||| || | |||| |||| |||
Sbjct 110598 CAACGCACCTA-TCTGTTCAATGCTATCGAGACCAGTAAGTTGCCTCGCGTCATCAGCAC 110540
Query 57912 ---GCC---------------------------------AAGAAGGCAGAGTGGTCAATC 57935
||| |||||||| || ||| | |
Sbjct 110539 AGTGCCATATTCTAACACGATCTAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTA 110480
Query 57936 AAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCC 57992
| |||||| || | || || | || ||||| || | || | || || |||||
Sbjct 110479 AGATGGATCCAA---GACAAGGACTCTACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCT 110423
Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGC 58052
|| || ||||| ||||| || || || || | ||||| ||| ||||||| || ||
Sbjct 110422 GTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGGTTGAAGAAGCGTGGT 110363
Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACT 58112
|||||||| || || || || ||||||| | || || || ||||| |||||||| ||
Sbjct 110362 CTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCACACC 110303
Query 58113 GATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA-TCTT 58171
|| ||||| ||||| ||| ||| ||| | | || || | || | ||| ||
Sbjct 110302 GACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCATCGTCC-AAGCAAGCAAGCAGTCCA 110244
Query 58172 GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGT 58231
||| |||| |||||||| || | |||||| | ||||| | || || || || ||
Sbjct 110243 AGACGTTATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTG 110184
Query 58232 GGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAG 58291
|| | ||||| |||||| || ||||||| | ||||||||||| || || || |
Sbjct 110183 TGCTCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCG 110124
Query 58292 ACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTAT 58351
|| | |||| || | ||| ||||||| | || || ||||| |||||
Sbjct 110123 TCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGACTTTAT 110064
Query 58352 GAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCA 58411
| | ||||| || | || ||||| ||||| ||||| || || ||| || ||
Sbjct 110063 GGAGAACATCTCCCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 110004
Query 58412 AAAATACGGCGTGATG 58427
||||| || || |||
Sbjct 110003 AAAATCTGGTGTTATG 109988
>seq762
Length=84765
Score = 120 bits (132), Expect = 3e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||||||||| || || || ||||| |||| || ||| | ||
Sbjct 20025 ATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 20084
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | | || | ||||| || || || ||||||||| || | || ||||||||
Sbjct 20085 GATACTATTGATAACGTCAAGTCAAAG-ATCCAGGACAAGGAGGGTATCCCACCCGACCA 20143
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || |||||||| || |||||||| || || || ||||||||
Sbjct 20144 GCAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAA 20203
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || ||||| |||||||| ||| | || | || ||||
Sbjct 20204 CATCCAGAAGGAGTCTACTCTCCATCTGGTTCTTCGCCTTCGTGGTGGTA 20253
Score = 102 bits (112), Expect = 7e-17
Identities = 149/208 (72%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || ||||| |||| || || | || |||| | |||| | ||||| |
Sbjct 19529 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAA---G 19585
Query 31277 AG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
|| || | | |||||||| ||| | || ||||||||||||||| | || |||||||||
Sbjct 19586 AGCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGC 19645
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393
|| ||| | || ||| | ||| | ||||| ||||| || || ||||| ||||||
Sbjct 19646 AAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTT 19705
Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || | || | |||||||
Sbjct 19706 CATCTCGTCCTCCGTCTTCGTGGCGGTA 19733
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||| |||| || || || || || | || ||||| ||||
Sbjct 20253 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 20312
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||| ||||| || | || |||||||||
Sbjct 20313 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 20372
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || ||||| || |||||||| || ||| ||||||| || |||
Sbjct 20373 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAAC 20432
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|| || || || || ||||| ||||||||
Sbjct 20433 ATCCAGAAGGAGTCTACTCTCCATCTGGT 20461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445754531469600
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