Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1094 304 1e-77 seq868 167 2e-36 seq762 120 3e-22 >seq1094 Length=98106 Score = 304 bits (336), Expect = 1e-77 Identities = 585/860 (68%), Gaps = 2/860 (0%) Strand=Plus/Minus Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||| || || ||||| ||||| | |||||||||||||||| | || | || |||||| Sbjct 29599 TCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 29540 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TG 23236 |||| ||||| ||| | ||| | |||| || | | ||| || || || Sbjct 29539 TTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGA-TGGTCTTGCGACCCTTG 29481 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 |||||| |||||||||| | || | || ||||||||| |||||||| || || || Sbjct 29480 CCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGA 29421 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | | || ||||| || |||| | | || ||||| || |||| Sbjct 29420 CCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATG 29361 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || ||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct 29360 AAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCG 29301 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||||| | | ||| | || || || || || || ||||| ||||||||||| | Sbjct 29300 TGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATC 29241 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | |||||| || ||||| || || || | ||| ||||||||| | Sbjct 29240 GCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAA 29181 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 |||| ||||| || || | ||||||||| ||| | ||| || | | || Sbjct 29180 ACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCA 29121 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 | || || | |||| || | | ||| || ||||| | || || ||||| || Sbjct 29120 GTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCA 29061 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || || ||||| ||||| || || ||||| |||||||| || | ||| |||||| Sbjct 29060 CAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAG 29001 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 || ||||| | ||| |||| || || |||| | || || || || ||||| ||| Sbjct 29000 CATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTA 28941 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836 ||||| | ||||| | |||||| || ||||| || ||||| || || ||||| Sbjct 28940 AAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGA 28881 Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATT 23896 ||||||| || || | ||| ||||||| ||| || | ||| | | ||| | | Sbjct 28880 ATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGA 28821 Query 23897 TTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGA 23956 || || ||||| | | | || || |||||||| || | ||||| || || ||| Sbjct 28820 CGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATCCCGA 28761 Query 23957 TCGTGCACTATGGCCGAATT 23976 || | || ||||| || || Sbjct 28760 TCATAGACAATGGCAGAGTT 28741 Score = 96.9 bits (106), Expect = 3e-15 Identities = 374/583 (64%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || || || |||||||| ||||||||||||| |||||| | || || || Sbjct 30574 TGGTACGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATAC 30515 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 ||| | || || | | || | ||||| | || | ||| || ||| |||| Sbjct 30514 TCGTGATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGA 30455 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || ||||| || ||||| | | | |||||| || || ||||| || | Sbjct 30454 TGAAGGCACCACGATCAGCAGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAG 30395 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCC--TCTGGACGGACCCGTT 22380 ||||||| || | |||| || || || ||| | | | |||| ||| || Sbjct 30394 TCTTGTAAAGAGCCTTGATATCGGCAGGAAT--ATTAGGGACATTTTGGATGGAACCTCC 30337 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440 || | ||||| || || || |||| ||| | ||| || || | ||| || Sbjct 30336 ATCGGCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTT 30277 Query 22441 GACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500 | | | |||| || ||||| || || || | |||||| || || ||| ||||| Sbjct 30276 CAATAACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTT 30217 Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560 ||||||| | || |||||| | || ||| || || || ||| ||| || || || Sbjct 30216 GGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGG 30157 Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGC 22618 ||| || || | || | ||| | | ||||||| ||| |||| ||| | Sbjct 30156 CATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTG--ATTTGTTGCTTCAAG 30099 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 | | ||||||||| ||||||| || || || || ||||||||||||||| | | | Sbjct 30098 GTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCTT---CCACATATCGTATTGGAGCTCT 30042 Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCAT 22721 || | || ||| |||||||| || ||||| | ||||| Sbjct 30041 CCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCAT 29999 >seq868 Length=196860 Score = 167 bits (184), Expect = 2e-36 Identities = 586/916 (64%), Gaps = 63/916 (7%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| |||||||| || || || ||||||| ||||||| | || ||| Sbjct 110898 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 110839 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | ||||| || ||||||| | ||| | Sbjct 110838 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 110779 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| ||||| || || |||||||||||||| | | || || Sbjct 110778 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTTAACGAGAACCTCCTGGAGCGA 110719 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||| || || || | ||||| | ||||| ||||| || ||| | || Sbjct 110718 TTCAGCGGAGAGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATGATG 110659 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865 || ||| | || || || | || || || |||||||| || ||| | ||||| || Sbjct 110658 GAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATTAAGGAGCAGGCT 110599 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA------TGCC-CGCG--ATC----- 57911 | | || || |||||||| || ||||| || | |||| |||| ||| Sbjct 110598 CAACGCACCTA-TCTGTTCAATGCTATCGAGACCAGTAAGTTGCCTCGCGTCATCAGCAC 110540 Query 57912 ---GCC---------------------------------AAGAAGGCAGAGTGGTCAATC 57935 ||| |||||||| || ||| | | Sbjct 110539 AGTGCCATATTCTAACACGATCTAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTA 110480 Query 57936 AAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCC 57992 | |||||| || | || || | || ||||| || | || | || || ||||| Sbjct 110479 AGATGGATCCAA---GACAAGGACTCTACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCT 110423 Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGC 58052 || || ||||| ||||| || || || || | ||||| ||| ||||||| || || Sbjct 110422 GTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGGTTGAAGAAGCGTGGT 110363 Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACT 58112 |||||||| || || || || ||||||| | || || || ||||| |||||||| || Sbjct 110362 CTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCACACC 110303 Query 58113 GATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA-TCTT 58171 || ||||| ||||| ||| ||| ||| | | || || | || | ||| || Sbjct 110302 GACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCATCGTCC-AAGCAAGCAAGCAGTCCA 110244 Query 58172 GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGT 58231 ||| |||| |||||||| || | |||||| | ||||| | || || || || || Sbjct 110243 AGACGTTATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTG 110184 Query 58232 GGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAG 58291 || | ||||| |||||| || ||||||| | ||||||||||| || || || | Sbjct 110183 TGCTCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCG 110124 Query 58292 ACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTAT 58351 || | |||| || | ||| ||||||| | || || ||||| ||||| Sbjct 110123 TCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGACTTTAT 110064 Query 58352 GAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCA 58411 | | ||||| || | || ||||| ||||| ||||| || || ||| || || Sbjct 110063 GGAGAACATCTCCCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 110004 Query 58412 AAAATACGGCGTGATG 58427 ||||| || || ||| Sbjct 110003 AAAATCTGGTGTTATG 109988 >seq762 Length=84765 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| || || || ||||| |||| || ||| | || Sbjct 20025 ATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 20084 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | ||||| || || || ||||||||| || | || |||||||| Sbjct 20085 GATACTATTGATAACGTCAAGTCAAAG-ATCCAGGACAAGGAGGGTATCCCACCCGACCA 20143 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || |||||||| || |||||||| || || || |||||||| Sbjct 20144 GCAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAA 20203 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || ||||| |||||||| ||| | || | || |||| Sbjct 20204 CATCCAGAAGGAGTCTACTCTCCATCTGGTTCTTCGCCTTCGTGGTGGTA 20253 Score = 102 bits (112), Expect = 7e-17 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || ||||| |||| || || | || |||| | |||| | ||||| | Sbjct 19529 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAA---G 19585 Query 31277 AG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || || | | |||||||| ||| | || ||||||||||||||| | || ||||||||| Sbjct 19586 AGCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGC 19645 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || ||| | ||| | ||||| ||||| || || ||||| |||||| Sbjct 19646 AAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTT 19705 Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || | || | ||||||| Sbjct 19706 CATCTCGTCCTCCGTCTTCGTGGCGGTA 19733 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || || || || | || ||||| |||| Sbjct 20253 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 20312 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| || | || ||||||||| Sbjct 20313 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 20372 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || |||||||| || ||| ||||||| || ||| Sbjct 20373 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAAC 20432 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || || || ||||| |||||||| Sbjct 20433 ATCCAGAAGGAGTCTACTCTCCATCTGGT 20461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445754531469600