Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq868 118 2e-21
seq455 98.7 2e-15
seq1094 87.8 4e-12
>seq868
Length=196860
Score = 118 bits (130), Expect = 2e-21
Identities = 167/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 101843 TTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT 101902
||||| || ||||||||||||| | ||||| | | ||||| ||| ||| || |
Sbjct 110514 TTCCCTGC-ATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTCT 110456
Query 101903 ---TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959
|| || | | | ||||||||||| || ||||| || |||||||| ||| ||
Sbjct 110455 ACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCA 110396
Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019
||||| || || |||||| | ||||| | ||| | |||| ||||| |||| ||||||
Sbjct 110395 TTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAAC 110336
Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072
||| |||| || | ||||||||||| || ||||||||| ||| | ||||
Sbjct 110335 GAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTT 110283
>seq455
Length=105345
Score = 98.7 bits (108), Expect = 2e-15
Identities = 199/292 (68%), Gaps = 10/292 (3%)
Strand=Plus/Minus
Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGA--CAGTAGAGGGTTATACGATAGAG 35390
|||||| | | ||| || ||||| |||| | | || | || | |||| | | | |
Sbjct 78566 ATCTGGGATGGTAACGGATCGCGCGAATATCTCGATTCGGTCG--GGTTGTCGCACCGCG 78509
Query 35391 CAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA-- 35448
||| || ||| | ||||| |||||||| || || ||| | ||||||||||| |||||
Sbjct 78508 CAGTCGGTGATCTTGGACCTGTATACGGTTTTCAGTGGAGGCATTTTGGTGCAGAATACG 78449
Query 35449 -TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAA 35507
||| || | |||||||| ||| | ||| |||| || | || | | |
Sbjct 78448 TCGATGCC---GAGACGGATTATACAGGACAAGGTGTTGACCAGCTTGCGGAGGTGATCC 78392
Query 35508 AGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGG 35567
| | || | | | ||||| ||||| ||||||| ||| || | || |||||||||| ||
Sbjct 78391 ATAAACTAAAAAACAATCCTTATGATCGAAGGATAATTTTGTCTGCCTGGAATCCTAAGG 78332
Query 35568 ATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
|| | | || ||||| || ||||| ||||||||| || || ||||| ||
Sbjct 78331 ATATGAAACTCATGGCCCTACCTCCCTGCCACATGTTCGCACAGTTTTACGT 78280
>seq1094
Length=98106
Score = 87.8 bits (96), Expect = 4e-12
Identities = 174/255 (68%), Gaps = 2/255 (1%)
Strand=Plus/Minus
Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845
|||| ||||||||| |||||||||| || || ||| |||||||| ||||||||
Sbjct 29093 CCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCG 29034
Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGT 94904
|| || || || || | | | | | | |||||| || || ||||| | | ||| |||
Sbjct 29033 TCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGG-TGT 28975
Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964
|| ||| || || || || || || ||||| || | || ||||| | || ||
Sbjct 28974 GCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGACATCAAATTGTA 28915
Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024
||| || || || | || || |||||||| ||||||||||| | ||| |||||
Sbjct 28914 TGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCAT 28855
Query 95025 GTCCTGAGGGCGCTC 95039
|| || || || ||
Sbjct 28854 GTGTTGTGGACGTTC 28840
Score = 84.2 bits (92), Expect = 4e-11
Identities = 119/168 (71%), Gaps = 12/168 (7%)
Strand=Plus/Minus
Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451
||| |||||||| ||||| || ||||| || | |||| ||| || || || | || ||
Sbjct 29487 ACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATC 29428
Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505
| ||| || |||||||||| |||||||||||| | ||| ||||||| ||
Sbjct 29427 AGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA----- 29373
Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553
|| | || |||||||||||| | | ||| | ||| ||| |||||
Sbjct 29372 -ACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATC 29326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989556993634150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |