Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq868 118 2e-21 seq455 98.7 2e-15 seq1094 87.8 4e-12 >seq868 Length=196860 Score = 118 bits (130), Expect = 2e-21 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 101843 TTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT 101902 ||||| || ||||||||||||| | ||||| | | ||||| ||| ||| || | Sbjct 110514 TTCCCTGC-ATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTCT 110456 Query 101903 ---TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959 || || | | | ||||||||||| || ||||| || |||||||| ||| || Sbjct 110455 ACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCA 110396 Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019 ||||| || || |||||| | ||||| | ||| | |||| ||||| |||| |||||| Sbjct 110395 TTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAAC 110336 Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| |||| || | ||||||||||| || ||||||||| ||| | |||| Sbjct 110335 GAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTT 110283 >seq455 Length=105345 Score = 98.7 bits (108), Expect = 2e-15 Identities = 199/292 (68%), Gaps = 10/292 (3%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGA--CAGTAGAGGGTTATACGATAGAG 35390 |||||| | | ||| || ||||| |||| | | || | || | |||| | | | | Sbjct 78566 ATCTGGGATGGTAACGGATCGCGCGAATATCTCGATTCGGTCG--GGTTGTCGCACCGCG 78509 Query 35391 CAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA-- 35448 ||| || ||| | ||||| |||||||| || || ||| | ||||||||||| ||||| Sbjct 78508 CAGTCGGTGATCTTGGACCTGTATACGGTTTTCAGTGGAGGCATTTTGGTGCAGAATACG 78449 Query 35449 -TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAA 35507 ||| || | |||||||| ||| | ||| |||| || | || | | | Sbjct 78448 TCGATGCC---GAGACGGATTATACAGGACAAGGTGTTGACCAGCTTGCGGAGGTGATCC 78392 Query 35508 AGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGG 35567 | | || | | | ||||| ||||| ||||||| ||| || | || |||||||||| || Sbjct 78391 ATAAACTAAAAAACAATCCTTATGATCGAAGGATAATTTTGTCTGCCTGGAATCCTAAGG 78332 Query 35568 ATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 || | | || ||||| || ||||| ||||||||| || || ||||| || Sbjct 78331 ATATGAAACTCATGGCCCTACCTCCCTGCCACATGTTCGCACAGTTTTACGT 78280 >seq1094 Length=98106 Score = 87.8 bits (96), Expect = 4e-12 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||||||||| |||||||||| || || ||| |||||||| |||||||| Sbjct 29093 CCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCG 29034 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGT 94904 || || || || || | | | | | | |||||| || || ||||| | | ||| ||| Sbjct 29033 TCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGG-TGT 28975 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || ||| || || || || || || ||||| || | || ||||| | || || Sbjct 28974 GCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGACATCAAATTGTA 28915 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| || || || | || || |||||||| ||||||||||| | ||| ||||| Sbjct 28914 TGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCAT 28855 Query 95025 GTCCTGAGGGCGCTC 95039 || || || || || Sbjct 28854 GTGTTGTGGACGTTC 28840 Score = 84.2 bits (92), Expect = 4e-11 Identities = 119/168 (71%), Gaps = 12/168 (7%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| |||||||| ||||| || ||||| || | |||| ||| || || || | || || Sbjct 29487 ACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATC 29428 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505 | ||| || |||||||||| |||||||||||| | ||| ||||||| || Sbjct 29427 AGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA----- 29373 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || | || |||||||||||| | | ||| | ||| ||| ||||| Sbjct 29372 -ACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATC 29326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989556993634150