Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1094 178 2e-39 seq868 104 3e-17 >seq1094 Length=98106 Score = 178 bits (196), Expect = 2e-39 Identities = 1189/1889 (63%), Gaps = 53/1889 (3%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| || || ||||||||||| | ||| | | ||||| || Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 30483 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 30482 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 30423 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 30422 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 30363 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | ||| || ||||| || ||||| | || || | ||||| || | ||| | Sbjct 30362 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 30303 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | | ||| | | | | | | |||||||| ||||||||||| ||| Sbjct 30302 CAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACCA 30243 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | ||| || | || | ||| || || || || || || | |||| || || Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | |||||| || ||||| |||||||| || || | ||||| || | ||||||| Sbjct 30182 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 30123 Query 62523 T-ATGTTCTGATTT-TATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 | || | |||||| | ||| || || |||| | ||||||||| | ||| ||| Sbjct 30122 TGCTGCT-TGATTTGTTGCTTCAAGGTG-GCCCAGTCCCAAAGATCGGTAGGTGTAACCT 30065 Query 62581 NNNNNNNNNNATATTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCA 62636 ||||| || || || | |||| || ||| | ||||| || Sbjct 30064 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 30009 Query 62637 TATGGTCCTTCCTTCTCAGCTAG-TTTACAACTCGCCTCTAATGCACCGTAATAAATGGT 62695 || | || | || || || || | ||| | || || ||| ||| || ||||| Sbjct 30008 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 29950 Query 62696 TTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 || ||||||| |||| |||| || || || || || ||||| | | ||||| Sbjct 29949 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGG-GAGTCGAAGAG 29891 Query 62756 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 | || | || || | || || ||||||| | | |||||||| || | ||| | Sbjct 29890 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 29832 Query 62815 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873 || | || || |||| ||| || || || || || || || || || | || | Sbjct 29831 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 29772 Query 62874 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62927 || | || | | ||||| | || || |||| || | | ||||| || Sbjct 29771 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 29712 Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 || | | | |||| ||| |||| ||||| || || ||||| | || | | || Sbjct 29711 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 29653 Query 62988 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 |||| | |||||| ||||| ||||| | ||| || || | || | ||||| Sbjct 29652 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 29593 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||||||| ||| || |||||||| || || ||||| || | || || || | || | Sbjct 29592 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 29533 Query 63107 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTC 63163 || | || | | ||| | | || | ||||| || | || | | | | ||| Sbjct 29532 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCTTGATGGT--CTTGCGACCCTTGCCTTC 29476 Query 63164 TCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 | ||||| ||| | || || ||||| || |||||| | | | || Sbjct 29475 TGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 29416 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAA 63280 || || | || ||||||| | ||| | | | ||| |||| || || ||||| || Sbjct 29415 GCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGAA 29359 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||| |||||||| ||||| || ||||| | | | | |||||| ||||| Sbjct 29358 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTG 29299 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| | ||||| |||||| | | | ||||| ||||| || || | ||| || || Sbjct 29298 GTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGC 29239 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | ||||| || || ||||| ||||| || | ||||| || ||||| || |||| Sbjct 29238 GAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAAC 29179 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 || | ||| |||| ||||||||| || | || || || || | || || ||||| | Sbjct 29178 TCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGT 29119 Query 63521 GGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 |||||| || | || ||| ||||| || || || || | || ||||| | | Sbjct 29118 GGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGG 29063 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | || || | || || || || || || || || || || |||||| | | | Sbjct 29062 CACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 29003 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || ||| | ||| | | || || || ||| | ||| ||||| ||||| | Sbjct 29002 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 28943 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | || || | | |||||| ||||| ||||| || ||||| | Sbjct 28942 TAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGT 28883 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 |||| || || || || | ||| | |||||| || || | ||| |||| ||| | | Sbjct 28882 GAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGA 28823 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 63874 | | ||| ||| | || | ||| || || ||||| || | ||| ||||| || Sbjct 28822 GACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TC 28765 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCT 63903 || || || | ||| | || ||||||| Sbjct 28764 CCGATCATAGACAATGGCAGAGTTGAGCT 28736 >seq868 Length=196860 Score = 104 bits (114), Expect = 3e-17 Identities = 337/520 (65%), Gaps = 5/520 (1%) Strand=Plus/Plus Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334 || |||||| || ||||||||| || | ||||| || ||||| || || || ||||| Sbjct 109985 AGCCATAACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 110044 Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAA 33394 | | || || || ||||| || ||||| || |||| |||||| | || | Sbjct 110045 GGCAAGGGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 110103 Query 33395 TCCCAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCAC 33453 | || | || | || | ||| |||||||| || || ||| ||||||| || Sbjct 110104 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 110163 Query 33454 AATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATA 33513 ||||| || | || | |||||||| |||| | || ||||| || || | Sbjct 110164 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 110223 Query 33514 CCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAA 33573 | || | || |||| | || | || | || || |||| || || | Sbjct 110224 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 110283 Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| | || || || ||| ||| ||||| ||||| | || | ||||| || | Sbjct 110284 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGA 110343 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||| || |||||||| || | ||| ||||| || |||||||| |||| Sbjct 110344 AGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGG 110403 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 33750 | |||||||| || || || || |||||||||| || | || | | | | | Sbjct 110404 AGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCT 110463 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33790 |||| || ||||| || ||||| ||||||||||| || Sbjct 110464 TGTCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTT 110503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800831106400