Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1094 221 2e-52 seq868 113 6e-20 >seq1094 Length=98106 Score = 221 bits (244), Expect = 2e-52 Identities = 1190/1880 (63%), Gaps = 39/1880 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || ||| ||||||||||| | ||| | | ||||| || Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 30483 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 30482 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 30423 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 30422 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 30363 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | ||| || ||||| || ||||| || || || | ||||| || | || | Sbjct 30362 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 30303 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 30302 CAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACCA 30243 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | ||| || | || | ||| || || || ||||| || | | || || || Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | |||||| || || ||||||||||| || || | ||||| || | ||||||| Sbjct 30182 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 30123 Query 79195 T-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 | || | |||||| | || | | |||| ||||||||||| | || ||| || Sbjct 30122 TGCTGCT-TGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCTT 30064 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313 ||| | ||| ||||| || || | ||| || ||| |||||| || |||| Sbjct 30063 CCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGT 30004 Query 79314 TCCTTCCTTTTCGGCTAATTC-ACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGA 79372 || | || | || | || ||| | || || || ||| || ||||| |||| Sbjct 30003 ACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGTCTCGA 29945 Query 79373 AAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG-AATA 79431 | |||| ||||||||| || || || | || ||||| | | ||||| | Sbjct 29944 AGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGG-GAGTCGAAGAGCTAGG 29886 Query 79432 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATT 79491 || | || || | || || ||||||| | | |||||||| || | ||| | || Sbjct 29885 AAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCTT 29827 Query 79492 TC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTAT 79550 | || || |||| ||| || || || || || || || || || | ||| | || | Sbjct 29826 GCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGAC 29767 Query 79551 TACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT------ACAAA 79604 || | | ||||| | || || |||| || | | ||||| || || | Sbjct 29766 AACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTA 29707 Query 79605 CATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATT 79663 | | || | ||| |||| |||||||| || ||||| | || | | || |||| Sbjct 29706 AGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACAGTATT 29648 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 | ||| || |||||||| || | ||||| || | || | |||||||||| Sbjct 29647 CAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCT 29588 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 || ||| || |||||||| || || ||||| || | || || || | || | || | Sbjct 29587 TTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGA 29528 Query 79784 TAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTT 79839 || | | ||| | | || | |||| | || | |||| | ||| |||| Sbjct 29527 GGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTTCTGCC 29472 Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||||| | ||| | || || ||||| || ||||||| | | || || || Sbjct 29471 TCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCAC 29412 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 |||| || ||||||| | ||| |||| | || || || ||||| |||||||| Sbjct 29411 TCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCT 29352 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 80019 |||||||| ||||| || ||||| | | | | ||||| ||||| |||||| Sbjct 29351 GGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTT 29292 Query 80020 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079 | ||||| |||||| | | | ||||| ||||| || || | ||| || || | | | Sbjct 29291 CTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCA 29232 Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 || || || || ||||| ||||| || | ||||| || ||||| || |||||| | | Sbjct 29231 CCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGC 29172 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 || |||| |||||| ||||| | || || || || | || || |||| ||||||| Sbjct 29171 ATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGG 29112 Query 80200 ATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 || | || ||| ||||| || || || || | || ||||| | || || Sbjct 29111 ATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGT 29056 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || | ||||| || || || || || || || || |||||| | | || || Sbjct 29055 CTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGA 28996 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 ||| | ||| | || || || ||| | ||| ||||| ||||| ||||| | Sbjct 28995 AGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTA 28936 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 || |||| | |||||| ||||| ||||| || ||||| ||||| || Sbjct 28935 CTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACC 28876 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495 || || || | ||| | |||||| || || | ||| | |||||| | | | Sbjct 28875 GACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAG 28816 Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCG 80553 | ||| ||| | || | ||| || || ||||| || | ||| ||||| || || || Sbjct 28815 AAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TCCCGATCA 28758 Query 80554 TAAATAATAACCGAGTTGAG 80573 || | ||| | |||||||| Sbjct 28757 TAGACAATGGCAGAGTTGAG 28738 >seq868 Length=196860 Score = 113 bits (124), Expect = 6e-20 Identities = 340/520 (65%), Gaps = 5/520 (1%) Strand=Plus/Plus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 || |||||| || ||||||||| || | ||||| || ||||| || || || ||||| Sbjct 109985 AGCCATAACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 110044 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 49772 | | || || || ||||| || ||||| || |||| || ||| | || | Sbjct 110045 GGCAAGGGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 110103 Query 49773 TCCCAATTCAGAA-ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCAC 49831 | || | || | || | ||| ||||| || || || ||| ||||||| || Sbjct 110104 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 110163 Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891 ||||| || | ||| | |||||||| |||| | || ||||| || || | Sbjct 110164 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 110223 Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 49951 | || || || |||| | || | || | || || |||| || || | Sbjct 110224 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 110283 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| | || || || ||| ||| ||||| ||||| | || || |||||||| | Sbjct 110284 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGA 110343 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || || || ||||| || |||||||| || | ||| ||||| || || ||||| || | Sbjct 110344 AGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGG 110403 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--AT-AACTGGCGC 50128 | |||||||| || || || |||||||||||||| || | || | || | | | Sbjct 110404 AGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCT 110463 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 50168 |||| || ||||| || ||||| ||||||||||| || Sbjct 110464 TGTCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTT 110503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718249676093200