Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 143 4e-29
seq868 107 3e-18
>seq1094
Length=98106
Score = 143 bits (158), Expect = 4e-29
Identities = 1111/1787 (62%), Gaps = 37/1787 (2%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| || |||||||||| ||| || || | ||||| || ||||||||||| || || |||
Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919
|| | |||| || || ||||||||||| | ||| |||| | ||||| ||
Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAG-TTGGATCCTTCAT 30484
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
||| || |||||||| || || ||||||||||| || | || |||||||| | |
Sbjct 30483 GTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAAC 30424
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
||| || || | || ||||| | ||| || |||| ||| ||||| | ||||
Sbjct 30423 GATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAAT 30364
Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
|| | ||| || ||||| || ||||| || || || | || || || | ||
Sbjct 30363 ATTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGA 30304
Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156
||| | | ||| | | | | | | ||| ||||| ||||| ||||| ||
Sbjct 30303 CCAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACC 30244
Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216
|| ||| || | || | ||| || || || || || || | |||| || ||
Sbjct 30243 AGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCC 30184
Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276
| |||||| || ||||| |||||||| || || | | ||| || | ||||||
Sbjct 30183 AAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACC 30124
Query 71277 ATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNN 71335
|| || | ||||| | || | | |||| | ||||||||| | ||| |||
Sbjct 30123 GTGCTGCT-TGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 30065
Query 71336 NNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATG 71395
|| | ||| || ||| | ||||| ||||| |
Sbjct 30064 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAG 30005
Query 71396 GTCCTTCTTTTTCGGCTAGTTC-ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCG 71454
|| | | | || || || ||| | || || || | | || ||||| |||
Sbjct 30004 TACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGTCTCG 29946
Query 71455 AAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG-AAT 71513
|| |||| ||||||||| || || || || || ||||| | | ||||| |
Sbjct 29945 AAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGG-GAGTCGAAGAGCTAG 29887
Query 71514 AAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAAT 71573
|| | || || | || || || |||| | | ||||||||||| | ||| | |
Sbjct 29886 GAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCT 29828
Query 71574 TTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTA 71632
| | || || |||| ||| || || || || || || || || || | || | || |
Sbjct 29827 TGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGA 29768
Query 71633 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAAACACGT 71692
|| | | ||||| | || || |||| || | || ||||| || ||||
Sbjct 29767 CAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGT 29708
Query 71693 TCAAG--------GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744
||| |||| ||| |||| |||||||| || ||||| | || | ||
Sbjct 29707 --AAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTA 29650
Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804
|| | || || ||||| ||||| | |||||| || | || | ||||||||
Sbjct 29649 TTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACT 29590
Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864
|||| ||| || |||||||| || || || || || | || || || | || | ||
Sbjct 29589 CTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTC 29530
Query 71865 TATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTC 71920
| || | | ||| | | || | |||| | || ||||| | ||| ||||
Sbjct 29529 GAGGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTTCTG 29474
Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980
||||| | ||| | || || ||||| || || ||| | | || || |
Sbjct 29473 CCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGC 29414
Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040
| || || || ||||||| || ||| |||| | | || || ||||| |||||||
Sbjct 29413 ACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGAT 29354
Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 72100
| |||||||| ||||| || ||||| | | | | ||||| ||||| ||||
Sbjct 29353 CTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCT 29294
Query 72101 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 72160
|| | ||||| |||||| | | | ||||| ||||| || || | ||| || || | |
Sbjct 29293 TTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAG 29234
Query 72161 CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 72220
| || || || || ||||| ||||| || | ||||| || ||||| || |||||| |
Sbjct 29233 CACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGA 29174
Query 72221 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 72280
||| |||| |||||| ||||| || || || || | || || |||| ||||||
Sbjct 29173 GCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC 29114
Query 72281 GAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340
| || || | ||||| || || || || | || ||||| | || || |
Sbjct 29113 GGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCT 29054
Query 72341 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 72400
| | ||||| || || || || ||||| || ||| |||||| | | || || ||
Sbjct 29053 TGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAG 28994
Query 72401 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 72460
| | ||| | || || || ||| | ||| ||||| ||||| ||||| | |
Sbjct 28993 AGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACT 28934
Query 72461 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCCCATTGATGTATTC 72517
| |||| | |||||| ||||| ||||| || || ||||| ||| || |
Sbjct 28933 TGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGA---ATAC 28877
Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564
| || || || | ||| | ||| || || || | ||| | ||||||
Sbjct 28876 CGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTG 28830
>seq868
Length=196860
Score = 107 bits (118), Expect = 3e-18
Identities = 340/522 (65%), Gaps = 9/522 (2%)
Strand=Plus/Plus
Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817
|| |||||| || ||||||||| || | ||||| || ||||| || || ||||||||
Sbjct 109985 AGCCATAACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 110044
Query 41818 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 41877
| | || || || ||||| || ||||| || |||| || ||| | || |
Sbjct 110045 GGCAAGGGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 110103
Query 41878 TCCCAATTCAGAA-ATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCAC 41936
| || | || | || | ||| |||| ||| || || ||| ||||||| ||
Sbjct 110104 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 110163
Query 41937 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 41996
||||| || | ||| | |||||||| |||| | || ||||| || || |
Sbjct 110164 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 110223
Query 41997 CCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 42054
| || || || |||| |||| |||| || | || || ||| || ||
Sbjct 110224 CAGCCTCGGTAATAACG--TCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGA 110281
Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114
|||| | || || || ||| ||| ||||| || || | || | ||||||||
Sbjct 110282 GAACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGA 110341
Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174
|| || || || ||||| || |||||||| || | ||| |||||||| || ||||| ||
Sbjct 110342 GAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACC 110401
Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 42231
|| |||||||| || || || || |||||||||| || | || | | | | |
Sbjct 110402 GGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTC 110461
Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 42273
|||| || ||||| || ||||| ||||||||||| ||
Sbjct 110462 CTTGTCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTT 110503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671121330918800
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