Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1094 143 4e-29 seq868 107 3e-18 >seq1094 Length=98106 Score = 143 bits (158), Expect = 4e-29 Identities = 1111/1787 (62%), Gaps = 37/1787 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || |||||||||| ||| || || | ||||| || ||||||||||| || || ||| Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919 || | |||| || || ||||||||||| | ||| |||| | ||||| || Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAG-TTGGATCCTTCAT 30484 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||| || |||||||| || || ||||||||||| || | || |||||||| | | Sbjct 30483 GTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAAC 30424 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 ||| || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 30423 GATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAAT 30364 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 || | ||| || ||||| || ||||| || || || | || || || | || Sbjct 30363 ATTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGA 30304 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| | | ||| | | | | | | ||| ||||| ||||| ||||| || Sbjct 30303 CCAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACC 30244 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || ||| || | || | ||| || || || || || || | |||| || || Sbjct 30243 AGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCC 30184 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | |||||| || ||||| |||||||| || || | | ||| || | |||||| Sbjct 30183 AAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACC 30124 Query 71277 ATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNN 71335 || || | ||||| | || | | |||| | ||||||||| | ||| ||| Sbjct 30123 GTGCTGCT-TGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 30065 Query 71336 NNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATG 71395 || | ||| || ||| | ||||| ||||| | Sbjct 30064 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAG 30005 Query 71396 GTCCTTCTTTTTCGGCTAGTTC-ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCG 71454 || | | | || || || ||| | || || || | | || ||||| ||| Sbjct 30004 TACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGTCTCG 29946 Query 71455 AAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG-AAT 71513 || |||| ||||||||| || || || || || ||||| | | ||||| | Sbjct 29945 AAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGG-GAGTCGAAGAGCTAG 29887 Query 71514 AAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAAT 71573 || | || || | || || || |||| | | ||||||||||| | ||| | | Sbjct 29886 GAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCT 29828 Query 71574 TTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTA 71632 | | || || |||| ||| || || || || || || || || || | || | || | Sbjct 29827 TGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGA 29768 Query 71633 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAAACACGT 71692 || | | ||||| | || || |||| || | || ||||| || |||| Sbjct 29767 CAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGT 29708 Query 71693 TCAAG--------GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744 ||| |||| ||| |||| |||||||| || ||||| | || | || Sbjct 29707 --AAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTA 29650 Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804 || | || || ||||| ||||| | |||||| || | || | |||||||| Sbjct 29649 TTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACT 29590 Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864 |||| ||| || |||||||| || || || || || | || || || | || | || Sbjct 29589 CTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTC 29530 Query 71865 TATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTC 71920 | || | | ||| | | || | |||| | || ||||| | ||| |||| Sbjct 29529 GAGGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTTCTG 29474 Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980 ||||| | ||| | || || ||||| || || ||| | | || || | Sbjct 29473 CCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGC 29414 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 | || || || ||||||| || ||| |||| | | || || ||||| ||||||| Sbjct 29413 ACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGAT 29354 Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 72100 | |||||||| ||||| || ||||| | | | | ||||| ||||| |||| Sbjct 29353 CTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCT 29294 Query 72101 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 72160 || | ||||| |||||| | | | ||||| ||||| || || | ||| || || | | Sbjct 29293 TTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAG 29234 Query 72161 CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 72220 | || || || || ||||| ||||| || | ||||| || ||||| || |||||| | Sbjct 29233 CACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGA 29174 Query 72221 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 72280 ||| |||| |||||| ||||| || || || || | || || |||| |||||| Sbjct 29173 GCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC 29114 Query 72281 GAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340 | || || | ||||| || || || || | || ||||| | || || | Sbjct 29113 GGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCT 29054 Query 72341 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 72400 | | ||||| || || || || ||||| || ||| |||||| | | || || || Sbjct 29053 TGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAG 28994 Query 72401 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 72460 | | ||| | || || || ||| | ||| ||||| ||||| ||||| | | Sbjct 28993 AGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACT 28934 Query 72461 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCCCATTGATGTATTC 72517 | |||| | |||||| ||||| ||||| || || ||||| ||| || | Sbjct 28933 TGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGA---ATAC 28877 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 | || || || | ||| | ||| || || || | ||| | |||||| Sbjct 28876 CGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTG 28830 >seq868 Length=196860 Score = 107 bits (118), Expect = 3e-18 Identities = 340/522 (65%), Gaps = 9/522 (2%) Strand=Plus/Plus Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817 || |||||| || ||||||||| || | ||||| || ||||| || || |||||||| Sbjct 109985 AGCCATAACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 110044 Query 41818 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 41877 | | || || || ||||| || ||||| || |||| || ||| | || | Sbjct 110045 GGCAAGGGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 110103 Query 41878 TCCCAATTCAGAA-ATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCAC 41936 | || | || | || | ||| |||| ||| || || ||| ||||||| || Sbjct 110104 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 110163 Query 41937 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 41996 ||||| || | ||| | |||||||| |||| | || ||||| || || | Sbjct 110164 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 110223 Query 41997 CCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 42054 | || || || |||| |||| |||| || | || || ||| || || Sbjct 110224 CAGCCTCGGTAATAACG--TCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGA 110281 Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114 |||| | || || || ||| ||| ||||| || || | || | |||||||| Sbjct 110282 GAACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGA 110341 Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174 || || || || ||||| || |||||||| || | ||| |||||||| || ||||| || Sbjct 110342 GAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACC 110401 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 42231 || |||||||| || || || || |||||||||| || | || | | | | | Sbjct 110402 GGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTC 110461 Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 42273 |||| || ||||| || ||||| ||||||||||| || Sbjct 110462 CTTGTCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTT 110503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671121330918800