Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq868 102 2e-16
seq829 100 7e-16
seq762 93.3 1e-13
>seq868
Length=196860
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||||||||| || ||||| ||||| || || || || ||| |||| || |||
Sbjct 110437 GTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGG 110378
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|||||||| | || || |||||||| | || ||||| ||||| | || | | |||
Sbjct 110377 TTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGAC 110318
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|||||| | ||| |||||| || ||
Sbjct 110317 GAAGGTCTCCACACCGACTTTGCCTG 110292
>seq829
Length=133551
Score = 100 bits (110), Expect = 7e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| |||||||| | || || || ||||| || || ||||| || || || | || |||
Sbjct 64758 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 64817
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| || || || || || || | ||||| || || || || || || || |||
Sbjct 64818 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 64877
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| | || || || || | |||||| || ||||||||||| ||||| |||
Sbjct 64878 TGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTC 64937
Query 104528 TTACCAGT 104535
|| || ||
Sbjct 64938 TTGCCCGT 64945
>seq762
Length=84765
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | ||||| || ||||| || || ||||| | ||| | || || ||
Sbjct 20461 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCC 20402
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
| || || ||||||||||| || ||||| || || || || || || || ||||||||
Sbjct 20401 AACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGG 20342
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| | || || || || | || || | || || || || |||||||||||
Sbjct 20341 ATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTT 20282
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | || || || || ||||||||
Sbjct 20281 CCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151366977618040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |