Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1094 183 4e-41 seq868 113 6e-20 >seq1094 Length=98106 Score = 183 bits (202), Expect = 4e-41 Identities = 1188/1887 (63%), Gaps = 53/1887 (3%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| || || ||||||||||| | ||| | | ||||| || Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 30483 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 30482 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 30423 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 30422 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 30363 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | ||| || ||||| || ||||| || || || | ||||| || | ||| | Sbjct 30362 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 30303 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 30302 CAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACCA 30243 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | ||| || | || | ||| || || || || || || | |||| || || Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | |||||| || ||||| |||||||| || || | ||||| || | ||||||| Sbjct 30182 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 30123 Query 62472 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529 | || | |||||| | || | |||| |||| | ||||||||| | ||| ||| Sbjct 30122 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 30065 Query 62530 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 62585 ||| || || || | |||| || ||| | ||||| ||| Sbjct 30064 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 30009 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 62644 || | || | || || || || || ||| | || || ||| ||| || ||||| Sbjct 30008 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 29950 Query 62645 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704 |||||||||| |||| |||| || || || | || ||||| | | ||||| Sbjct 29949 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGG-GAGTCGAAGAG 29891 Query 62705 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763 | || | || || | || || ||||||| | | |||||||| || | ||| | Sbjct 29890 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 29832 Query 62764 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822 || | || || |||| ||| || || || || || || || || || | || | Sbjct 29831 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 29772 Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62876 || | || | | ||||| | || || |||| || | | ||||| || Sbjct 29771 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 29712 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 || | | | |||| ||| |||| |||||||| || ||||| | || | | || Sbjct 29711 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 29653 Query 62937 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 |||| | |||||| ||||| ||||| | ||| || || | || | ||||| Sbjct 29652 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 29593 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 ||||||| ||| || |||||||| || || ||||| || | || || || | || | Sbjct 29592 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 29533 Query 63056 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTC 63112 || | || | | ||| | | || | ||||| || | || | | | | ||| Sbjct 29532 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCTTGATGGT--CTTGCGACCCTTGCCTTC 29476 Query 63113 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 | ||||| ||| | || || ||||| || |||||| | | || || Sbjct 29475 TGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 29416 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAA 63229 || || | || ||||||| | ||| | | | ||| |||| || || ||||| || Sbjct 29415 GCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGAA 29359 Query 63230 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 |||||| |||||||| ||||| || ||||| | | | | |||||| ||||| Sbjct 29358 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTG 29299 Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||||| | ||||| |||||| | | | ||||| ||||| || || | ||| || || Sbjct 29298 GTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGC 29239 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | | | ||||| || || ||||| ||||| || | ||||| || ||||| || |||| Sbjct 29238 GAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAAC 29179 Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469 || | ||| |||| ||||||||| || | || || || || | || || |||| | Sbjct 29178 TCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGT 29119 Query 63470 GGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 |||||| || | || ||| ||||| || || || || | || ||||| | | Sbjct 29118 GGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGG 29063 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | || || | || || || ||||| || || || || || |||||| | | | Sbjct 29062 CACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 29003 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 | || ||| | ||| | || || || ||| | ||| ||||| ||||| | Sbjct 29002 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 28943 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705 |||| | || || | | |||||| ||||| ||||| || ||||| | Sbjct 28942 TAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGT 28883 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 |||| || || || || | ||| | |||||| || || | ||| | |||||| | | Sbjct 28882 GAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGA 28823 Query 63766 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 63823 | | ||| ||| | || | ||| || || ||||| || | ||| ||||| || Sbjct 28822 GACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TC 28765 Query 63824 TCGTTCGTAAATAATAACCGAGTTGAG 63850 || || || | ||| | |||||||| Sbjct 28764 CCGATCATAGACAATGGCAGAGTTGAG 28738 >seq868 Length=196860 Score = 113 bits (124), Expect = 6e-20 Identities = 339/520 (65%), Gaps = 5/520 (1%) Strand=Plus/Plus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 || |||||| || ||||||||| || | ||||| || ||||| || || || ||||| Sbjct 109985 AGCCATAACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 110044 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116 | | || || || ||||| || ||||| || |||| || ||| | || | Sbjct 110045 GGCAAGGGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 110103 Query 33117 TCCCAATTCAGAA-ATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCAC 33175 | || | || | || | ||| |||||||| || || ||| ||||||| || Sbjct 110104 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 110163 Query 33176 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 33235 ||||| || | ||| | |||||||| |||| | || ||||| || || | Sbjct 110164 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 110223 Query 33236 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295 | || || || |||| | || | || | || || |||| || || | Sbjct 110224 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 110283 Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| | || || || ||| ||| ||||| ||||| | || || |||||||| | Sbjct 110284 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGA 110343 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||| || |||||||| || | ||| ||||| || |||||||| || | Sbjct 110344 AGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGG 110403 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 33472 | |||||||| || || || || |||||||||| || | || | | | | | Sbjct 110404 AGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCT 110463 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 |||| || ||||| || ||||| ||||||||||| || Sbjct 110464 TGTCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTT 110503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622930614030800