Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 183 4e-41
seq868 113 6e-20
>seq1094
Length=98106
Score = 183 bits (202), Expect = 4e-41
Identities = 1188/1887 (63%), Gaps = 53/1887 (3%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
|||||||||||||||||||| || | | ||||| || |||||||| || || || |||
Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| | |||| || || ||||||||||| | ||| | | ||||| ||
Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 30483
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
||||| ||||| ||||| || ||||||||||| || | || |||||||| | | |
Sbjct 30482 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 30423
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| || || | || ||||| | ||| || |||| ||| ||||| | ||||
Sbjct 30422 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 30363
Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | ||| || ||||| || ||||| || || || | ||||| || | ||| |
Sbjct 30362 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 30303
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|| | | ||| | | | | | | || ||||| ||||| ||||| |||
Sbjct 30302 CAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACCA 30243
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
| ||| || | || | ||| || || || || || || | |||| || ||
Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183
Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471
| |||||| || ||||| |||||||| || || | ||||| || | |||||||
Sbjct 30182 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 30123
Query 62472 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529
| || | |||||| | || | |||| |||| | ||||||||| | ||| |||
Sbjct 30122 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 30065
Query 62530 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 62585
||| || || || | |||| || ||| | ||||| |||
Sbjct 30064 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 30009
Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 62644
|| | || | || || || || || ||| | || || ||| ||| || |||||
Sbjct 30008 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 29950
Query 62645 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704
|||||||||| |||| |||| || || || | || ||||| | | |||||
Sbjct 29949 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGG-GAGTCGAAGAG 29891
Query 62705 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763
| || | || || | || || ||||||| | | |||||||| || | ||| |
Sbjct 29890 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 29832
Query 62764 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822
|| | || || |||| ||| || || || || || || || || || | || |
Sbjct 29831 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 29772
Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62876
|| | || | | ||||| | || || |||| || | | ||||| ||
Sbjct 29771 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 29712
Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936
|| | | | |||| ||| |||| |||||||| || ||||| | || | | ||
Sbjct 29711 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 29653
Query 62937 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995
|||| | |||||| ||||| ||||| | ||| || || | || | |||||
Sbjct 29652 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 29593
Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055
||||||| ||| || |||||||| || || ||||| || | || || || | || |
Sbjct 29592 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 29533
Query 63056 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTC 63112
|| | || | | ||| | | || | ||||| || | || | | | | |||
Sbjct 29532 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCTTGATGGT--CTTGCGACCCTTGCCTTC 29476
Query 63113 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172
| ||||| ||| | || || ||||| || |||||| | | || ||
Sbjct 29475 TGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 29416
Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAA 63229
|| || | || ||||||| | ||| | | | ||| |||| || || ||||| ||
Sbjct 29415 GCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGAA 29359
Query 63230 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
|||||| |||||||| ||||| || ||||| | | | | |||||| |||||
Sbjct 29358 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTG 29299
Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349
|||||| | ||||| |||||| | | | ||||| ||||| || || | ||| || ||
Sbjct 29298 GTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGC 29239
Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409
| | | ||||| || || ||||| ||||| || | ||||| || ||||| || ||||
Sbjct 29238 GAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAAC 29179
Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469
|| | ||| |||| ||||||||| || | || || || || | || || |||| |
Sbjct 29178 TCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGT 29119
Query 63470 GGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525
|||||| || | || ||| ||||| || || || || | || ||||| | |
Sbjct 29118 GGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGG 29063
Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585
| || || | || || || ||||| || || || || || |||||| | | |
Sbjct 29062 CACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 29003
Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645
| || ||| | ||| | || || || ||| | ||| ||||| ||||| |
Sbjct 29002 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 28943
Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705
|||| | || || | | |||||| ||||| ||||| || ||||| |
Sbjct 28942 TAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGT 28883
Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765
|||| || || || || | ||| | |||||| || || | ||| | |||||| | |
Sbjct 28882 GAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGA 28823
Query 63766 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 63823
| | ||| ||| | || | ||| || || ||||| || | ||| ||||| ||
Sbjct 28822 GACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TC 28765
Query 63824 TCGTTCGTAAATAATAACCGAGTTGAG 63850
|| || || | ||| | ||||||||
Sbjct 28764 CCGATCATAGACAATGGCAGAGTTGAG 28738
>seq868
Length=196860
Score = 113 bits (124), Expect = 6e-20
Identities = 339/520 (65%), Gaps = 5/520 (1%)
Strand=Plus/Plus
Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056
|| |||||| || ||||||||| || | ||||| || ||||| || || || |||||
Sbjct 109985 AGCCATAACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 110044
Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116
| | || || || ||||| || ||||| || |||| || ||| | || |
Sbjct 110045 GGCAAGGGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 110103
Query 33117 TCCCAATTCAGAA-ATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCAC 33175
| || | || | || | ||| |||||||| || || ||| ||||||| ||
Sbjct 110104 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 110163
Query 33176 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 33235
||||| || | ||| | |||||||| |||| | || ||||| || || |
Sbjct 110164 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 110223
Query 33236 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295
| || || || |||| | || | || | || || |||| || || |
Sbjct 110224 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 110283
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
||| | || || || ||| ||| ||||| ||||| | || || |||||||| |
Sbjct 110284 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGA 110343
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
| || || || ||||| || |||||||| || | ||| ||||| || |||||||| || |
Sbjct 110344 AGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGG 110403
Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 33472
| |||||||| || || || || |||||||||| || | || | | | | |
Sbjct 110404 AGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCT 110463
Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512
|||| || ||||| || ||||| ||||||||||| ||
Sbjct 110464 TGTCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTT 110503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622930614030800
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