Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 129 6e-25
seq762 91.5 1e-13
seq829 87.8 2e-12
>seq1094
Length=98106
Score = 129 bits (142), Expect = 6e-25
Identities = 426/647 (66%), Gaps = 19/647 (3%)
Strand=Plus/Minus
Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297
||||||||| |||||||| || || || || |||| ||||| | || || |||
Sbjct 29484 CTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 29425
Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356
| |||||| ||||||| ||||||||||| || |||| | || | || ||| || | ||
Sbjct 29424 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCT-TCTCAACACGCT 29366
Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGG 148416
|||| || ||||| || |||| | || | | ||||||||||| | |||||
Sbjct 29365 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 29306
Query 148417 CACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGA 148473
|| || |||| ||||| | || ||| || || |||||||| |||||||
Sbjct 29305 TTCCGTGGTT---CTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGA 29249
Query 148474 TGTATACGGTCATGGCGCCTTTCCTTTTA---CCTCCTTGATCGACATGGCGTAGCA-TG 148529
||| | | | || || | ||| || || || || |||| | | || ||
Sbjct 29248 GGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATC-TGGCTGTG 29190
Query 148530 CTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTTCC-GTTTGTGGATTCAAT 148588
| || ||||| || | ||| | ||| ||| | |||||| ||||||| ||||
Sbjct 29189 TTGTTGAAAACTCGGAGCATAGGAAC-AATACCGTTGGAGTTCCCGTTTGTGCCAGCAAT 29131
Query 148589 TTTACTATTGGTGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAG 148647
| | ||||| || ||| || | ||||||||| ||||| || || | | || |
Sbjct 29130 GTAAGCTCCAGTGGCACGGATTCTGTG-GACATTCAGACCGATACCTCCAGCATTCTTGG 29072
Query 148648 ATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGT 148707
| |||||||||||| ||||| || | || || |||| ||||||||||| | ||||
Sbjct 29071 AGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 29012
Query 148708 TAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGAC 148767
| || | |||| || || | ||| | | |||| | | ||| || ||||||
Sbjct 29011 CGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAG 28952
Query 148768 TAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATG 148826
||||| || || | |||| | |||||| | || | |||||||| || || ||
Sbjct 28951 ACGCGTGTGTAAAGTAC-TTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATA 28893
Query 148827 TCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873
||||| || ||||| | ||| || | ||| | ||||||||| ||
Sbjct 28892 TCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGG 28846
>seq762
Length=84765
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852
||||| || | ||||| ||||| | |||||| ||| |||||||| | |||||
Sbjct 19821 ACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAATGTCAAGTCG 19880
Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912
||||| || || || || || ||||||||||| ||| | | || | || ||| ||
Sbjct 19881 AAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATCTTCGCCGGAAAG 19940
Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972
||||||||||||| | | | | ||| || ||||| ||||| || || ||| ||||
Sbjct 19941 CAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGGAGTCCACTCTCCAC 20000
Query 26973 CTGGTCCT 26980
|||||||
Sbjct 20001 TTGGTCCT 20008
>seq829
Length=133551
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864
|| ||| | || |||| || ||| || ||||| | ||||| ||||| |||
Sbjct 64933 ATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCCAAGATCCAGGAC 64874
Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924
|| || || || || ||||| |||||| | ||||| | || |||||| ||||||||||||
Sbjct 64873 AAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAGCAACTCGAAGAT 64814
Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| | | | || |||||| ||||| || || || || ||| | ||||| |||||
Sbjct 64813 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCATCTAGTCCT 64758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478649655613600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |