Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1094 129 6e-25 seq762 91.5 1e-13 seq829 87.8 2e-12 >seq1094 Length=98106 Score = 129 bits (142), Expect = 6e-25 Identities = 426/647 (66%), Gaps = 19/647 (3%) Strand=Plus/Minus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 ||||||||| |||||||| || || || || |||| ||||| | || || ||| Sbjct 29484 CTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 29425 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356 | |||||| ||||||| ||||||||||| || |||| | || | || ||| || | || Sbjct 29424 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCT-TCTCAACACGCT 29366 Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGG 148416 |||| || ||||| || |||| | || | | ||||||||||| | ||||| Sbjct 29365 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 29306 Query 148417 CACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGA 148473 || || |||| ||||| | || ||| || || |||||||| ||||||| Sbjct 29305 TTCCGTGGTT---CTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGA 29249 Query 148474 TGTATACGGTCATGGCGCCTTTCCTTTTA---CCTCCTTGATCGACATGGCGTAGCA-TG 148529 ||| | | | || || | ||| || || || || |||| | | || || Sbjct 29248 GGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATC-TGGCTGTG 29190 Query 148530 CTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTTCC-GTTTGTGGATTCAAT 148588 | || ||||| || | ||| | ||| ||| | |||||| ||||||| |||| Sbjct 29189 TTGTTGAAAACTCGGAGCATAGGAAC-AATACCGTTGGAGTTCCCGTTTGTGCCAGCAAT 29131 Query 148589 TTTACTATTGGTGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAG 148647 | | ||||| || ||| || | ||||||||| ||||| || || | | || | Sbjct 29130 GTAAGCTCCAGTGGCACGGATTCTGTG-GACATTCAGACCGATACCTCCAGCATTCTTGG 29072 Query 148648 ATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGT 148707 | |||||||||||| ||||| || | || || |||| ||||||||||| | |||| Sbjct 29071 AGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 29012 Query 148708 TAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGAC 148767 | || | |||| || || | ||| | | |||| | | ||| || |||||| Sbjct 29011 CGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAG 28952 Query 148768 TAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATG 148826 ||||| || || | |||| | |||||| | || | |||||||| || || || Sbjct 28951 ACGCGTGTGTAAAGTAC-TTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATA 28893 Query 148827 TCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873 ||||| || ||||| | ||| || | ||| | ||||||||| || Sbjct 28892 TCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGG 28846 >seq762 Length=84765 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 ||||| || | ||||| ||||| | |||||| ||| |||||||| | ||||| Sbjct 19821 ACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAATGTCAAGTCG 19880 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 ||||| || || || || || ||||||||||| ||| | | || | || ||| || Sbjct 19881 AAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATCTTCGCCGGAAAG 19940 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||||||||||| | | | | ||| || ||||| ||||| || || ||| |||| Sbjct 19941 CAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGGAGTCCACTCTCCAC 20000 Query 26973 CTGGTCCT 26980 ||||||| Sbjct 20001 TTGGTCCT 20008 >seq829 Length=133551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 || ||| | || |||| || ||| || ||||| | ||||| ||||| ||| Sbjct 64933 ATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCCAAGATCCAGGAC 64874 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || || || || || ||||| |||||| | ||||| | || |||||| |||||||||||| Sbjct 64873 AAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAGCAACTCGAAGAT 64814 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | | | | || |||||| ||||| || || || || ||| | ||||| ||||| Sbjct 64813 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCATCTAGTCCT 64758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649655613600