Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1094 347 3e-90 seq455 86.0 2e-11 >seq1094 Length=98106 Score = 347 bits (384), Expect = 3e-90 Identities = 1173/1798 (65%), Gaps = 49/1798 (3%) Strand=Plus/Plus Query 363386 ATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATT 363444 ||| ||| |||| ||||| | |||| ||| ||||| |||| || || | || | ||| Sbjct 28779 ATACTTT-GGATTCAAGACTCTTGAGAGATCATACCT-TCTCCGTCTCGAGGGCAAGATT 28836 Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 | ||||| || || || ||| | ||| | || ||| | ||||| || | ||| || Sbjct 28837 GCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATATT 28896 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGC 363562 || || || || ||||| || || | || | | ||| || || ||||| | | Sbjct 28897 GAGAGTGCTATCGAGACATACAA--TTTGATGTCCAGCAAGTACTTTACACACGCGTCTC 28954 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 |||| | | || || || | | |||| | ||||| ||||| | | | | Sbjct 28955 CAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACA 29014 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 ||||||| || ||||| ||||| | || || || |||| |||||| | || |||| Sbjct 29015 TGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCA 29074 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG-TTACATT 363741 ||||||| || || || ||| | |||||| | ||||| || || ||||||| Sbjct 29075 AGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGC-CACTGGAGCTTACATT 29133 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 |||||| || |||| || || | ||||| ||||| || || || |||| || Sbjct 29134 GCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACA 29193 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || || || || |||||||||||| |||||| || || || || || || |||||| Sbjct 29194 GCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAG 29253 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || || || ||| | |||||||| ||||| ||| | || ||| ||||| |||||| Sbjct 29254 CCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGAGGAA 29313 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | || || || ||||| ||||| || || ||| || | || | || |||||||| || Sbjct 29314 GTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTT 29373 Query 363982 GAGGCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 ||| |||||| ||| |||| | ||||| |||| || || |||||| | Sbjct 29374 GAG------AAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCT 29427 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 ||||| | |||||||| | || ||||| || || ||||| || | || || |||| | Sbjct 29428 GATGTTTACGGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGT 29487 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || ||||| || || |||||||| |||| ||||| | || |||| | ||||| Sbjct 29488 CGCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACC 29547 Query 364156 GGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 |||| ||||| | ||| | ||||| ||| | |||||||| ||| || ||| || |||| Sbjct 29548 GGAA-ACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCT 29606 Query 364215 TGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 |||||| | || |||| ||| || || || ||||| |||||||| || || |||| Sbjct 29607 TGGTACCA-TCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATACTGTGCACCTGACG 29665 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATG 364327 || || || |||||| | || || | || || || | | || ||| |||| Sbjct 29666 AGGTCGCTGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGTCAACCAAAATGATG 29725 Query 364328 GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCA-ATCTCG- 364384 | | | ||| ||| | ||| | || || || || | | | || | | || | Sbjct 29726 GCAGCTACGACTTTCAGAAGCTTCACGATGT---CTGCCAGGTTGTCGTGAAGAACTTGA 29782 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGT 364443 ||||| | ||||||| || || || || |||| || || || | | ||| | ||| Sbjct 29783 ACAAGATCATCGACATCAACTACTACCCTGTTCCCGAGGCACGCAAGAGC-AATTTCCGT 29841 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT-GATGCTCAAGAT 364502 || | || |||| | ||||||| ||||| ||||| || || || | | | || | | Sbjct 29842 CACAGACCTATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGA-CT 29900 Query 364503 GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 |||| || || || || || ||| |||| ||||||| || || || || Sbjct 29901 CCCATTCGAGTCTCCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCA 29960 Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 || || ||||| | || ||| | ||||| | || | ||| || || || Sbjct 29961 CGCTGCCTTGACTTCATCTGTTGAGCTTGCAAAGCAGCATGGTACTTACGAGACATACGA 30020 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682 || ||||| ||| || ||| | |||| | ||| | ||||| || || || | | Sbjct 30021 AGGTTCCCCAGCTTCACAAGGAGAGCTCCAATACGATATGTGGAAGGTTACACCTACCGA 30080 Query 364683 CCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---T 364738 | ||| |||||| || | | | ||| | ||| |||| ||| ||| ||| | Sbjct 30081 TCTTTGGGACTGGGCCACCTTGAAGCAACAA-ATCAAGCAGCACGGTCTTCGTAACAGTT 30139 Query 364739 CCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGT 364798 |||||| || || ||||| || || ||| || ||||| || |||||||| Sbjct 30140 TGCTCGTT---GCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGT 30196 Query 364799 GCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGG 364858 | ||||| || | ||| ||| | || || || || || | | || ||||| | | Sbjct 30197 GTTTCGAGCCATACACATCCAACATCTACTCCCGACGTGTCTTGGCTGGTGAATTCCAAG 30256 Query 364859 TAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGA 364918 | ||||| | || | ||||||||| ||| || || ||| || | ||||| Sbjct 30257 TCGTTAACCCTTGGTTATTGAAGGATCTTGTCGATATGGGTCTCTGGTCAGATAACATGA 30316 Query 364919 AGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATC 364978 ||||| ||||||||||| | ||||| | || || | || |||| | ||| Sbjct 30317 AGAACCGTATCATCGCCGATGGAGGTTCCATCCAAAATGTCCCTAATATTCCTGCCGATA 30376 Query 364979 TGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGG 365038 | ||| || ||||||| || || ||||| || ||| ||| || || || | ||||| | Sbjct 30377 TCAAGGCTCTTTACAAGACTGTCTGGGAGATCTCCCAGCGTACCATCGTTCAGATGGCTG 30436 Query 365039 CCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAA 365098 | ||||| ||||| || ||| ||| ||| ||| | ||| | ||||| | |||| Sbjct 30437 CTGATCGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAA 30496 Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | | |||| | || ||||| ||| || ||||| | ||||| ||||| || Sbjct 30497 CTATGGGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGG 30554 >seq455 Length=105345 Score = 86.0 bits (94), Expect = 2e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 111423 AAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCG-ACAA 111481 || || |||||||| || ||||| || || | ||| ||||| || || |||||| || Sbjct 78569 AAGATCTGGGATGGTAACGGATCGCGCGAATATCTCGATTCGGTCGGG-TTGTCGCACCG 78511 Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 || || |||||||| ||||| || ||||| ||||| ||| | || ||||||||||| || Sbjct 78510 CGCAGTCGGTGATCTTGGACCTGTATACGGTTTTCAGTGGAGGCATTTTGGTGCAGAATA 78451 Query 111542 C 111542 | Sbjct 78450 C 78450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303318030665660