Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq762 84.2 1e-11
>seq762
Length=84765
Score = 84.2 bits (92), Expect = 1e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| ||| ||||| |||||| || || || ||||||||||| ||| | || ||
Sbjct 20233 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCCTCC 20174
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
|| || ||||| || || || || | || || |||| |||| || || ||||||
Sbjct 20173 AACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 20114
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| ||| || || | | |||||| ||| || || | ||| || || ||
Sbjct 20113 ATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTT 20054
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| |||| || |||||||| ||||||||
Sbjct 20053 CCGGTCAGAGTCTTCACGAAAATCTGCAT 20025
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/218 (69%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||||||||||| ||| ||||| |||||| || || ||||| || |||| || |
Sbjct 20468 ACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCC 20409
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || || || || || ||||| || || | || || |||| |||| || || ||
Sbjct 20408 ATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTT 20349
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTA 38279
||| || || ||| || || | || || || | || |||||||| | |||
Sbjct 20348 ATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGAC--TCAACTTCCAGAGTA 20291
Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || ||||| || || ||||| ||||||||
Sbjct 20290 ATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334938504980030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |