Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 205 1e-47
seq868 93.3 5e-14
>seq1094
Length=98106
Score = 205 bits (226), Expect = 1e-47
Identities = 1193/1888 (63%), Gaps = 55/1888 (3%)
Strand=Plus/Minus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
|||||||||||||||||||| || | | ||||| || |||||||| || || || |||
Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | |||| || || ||||||||||| | ||| | | ||||| ||
Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 30483
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
||||| ||||| ||||| || ||||||||||| || | || |||||||| | |
Sbjct 30482 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 30423
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || || | || ||||| | ||| || |||| ||| ||||| | ||||
Sbjct 30422 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 30363
Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | ||| || ||||| || ||||| || || || | ||||| || | ||| |
Sbjct 30362 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 30303
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|| | | ||| | | | | | | || ||||| ||||| ||||| |||
Sbjct 30302 CAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACCA 30243
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| ||| || | || | ||| || || || || || || | | |||| || ||
Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183
Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326
| |||||| || ||||| |||||||| || || | ||||| || | |||||||
Sbjct 30182 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 30123
Query 62327 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62384
| || | |||||| | || | |||| |||| | ||||||||| | ||| |||
Sbjct 30122 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 30065
Query 62385 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 62440
||| || || || | |||| || ||| | ||||| |||
Sbjct 30064 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 30009
Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499
|| | || | || || || || || ||| | || || ||| ||| || |||||
Sbjct 30008 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 29950
Query 62500 TTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559
|||||||||| |||| |||| || || || | || ||||| | | |||||
Sbjct 29949 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGG-GAGTCGAAGAG 29891
Query 62560 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618
| || | || || | || || ||||||| | | |||||||| || | ||| |
Sbjct 29890 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 29832
Query 62619 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677
|| | || || |||| ||| || || || || || || || || || | || |
Sbjct 29831 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 29772
Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62731
|| | || | | ||||| | || || |||| || | | ||||| ||
Sbjct 29771 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 29712
Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791
|| | | | |||| ||| |||| |||||||| || ||||| | || | | ||
Sbjct 29711 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 29653
Query 62792 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850
|||| | |||||| ||||| ||||| | |||||| || | || | |||||
Sbjct 29652 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 29593
Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910
||||||| ||| || |||||||| || || ||||| || | || || || | || |
Sbjct 29592 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 29533
Query 62911 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TT 62966
|| | || | | ||| | | || | |||| | || | ||| | ||| ||
Sbjct 29532 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTT 29477
Query 62967 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026
|| ||||| ||| | || || ||||| || |||||| | || || |
Sbjct 29476 CTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGG 29417
Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAA 63083
| || || | || ||||||| | ||| | | | ||| |||| || || ||||| |
Sbjct 29416 GGCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGA 29360
Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143
||||||| |||||||| ||||| || ||||| | | | | |||||| |||||
Sbjct 29359 AGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGT 29300
Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203
|||||| | ||||| |||||| | | | ||||| ||||| || || | ||| || |
Sbjct 29299 GGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCG 29240
Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263
| | | | ||||| || || ||||| ||||| || | ||||| || ||||| || |||
Sbjct 29239 CGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAA 29180
Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323
||| | ||| |||| |||||| ||||| | || || || || | || || ||||
Sbjct 29179 CTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAG 29120
Query 63324 TGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379
||||||| || | || ||| ||||| || || || || | || ||||| |
Sbjct 29119 TGGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATG 29064
Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439
|| || || | ||||| || || || || ||||| || ||| |||||| | |
Sbjct 29063 GCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAG 29004
Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499
|| || ||| | ||| | || || || ||| | ||| ||||| |||||
Sbjct 29003 AAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGT 28944
Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63559
||||| | || || | | |||||| ||||| ||||| || |||||
Sbjct 28943 GTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCG 28884
Query 63560 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63619
||||| || || || || | ||| | |||||| || || | ||| | |||||| |
Sbjct 28883 TGAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCG 28824
Query 63620 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 63677
| | | ||| ||| | || | ||| || || ||||| || | ||| ||||| |
Sbjct 28823 AGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--T 28766
Query 63678 CTCGTTCGTAAATAATAACCGAGTTGAG 63705
| || || || | ||| | ||||||||
Sbjct 28765 CCCGATCATAGACAATGGCAGAGTTGAG 28738
>seq868
Length=196860
Score = 93.3 bits (102), Expect = 5e-14
Identities = 337/522 (65%), Gaps = 9/522 (2%)
Strand=Plus/Plus
Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413
|| |||||| || ||||||||| || | ||||| || ||||| || || || || ||
Sbjct 109985 AGCCATAACACCAGATTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 110044
Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAA 32473
| | || || || ||||| || || ||||| |||| || ||| | || |
Sbjct 110045 GGCAAGGGAGATGTTCTCCATAAAGTCAAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 110103
Query 32474 TCCCAATTCAGAA-ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCAC 32532
| || | || | || | ||| ||||| || || || ||| ||||||| ||
Sbjct 110104 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 110163
Query 32533 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 32592
||||| || | ||| | |||||||| |||| | || ||||| || || |
Sbjct 110164 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 110223
Query 32593 CCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 32650
| || || || |||| |||| |||| || | || || ||| || ||
Sbjct 110224 CAGCCTCGGTAATAACG--TCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGA 110281
Query 32651 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710
|||| | || || || ||| ||| ||||| ||||| | || | ||||||||
Sbjct 110282 GAACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGA 110341
Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 32770
|| || || || ||||| || |||||||| || | ||| ||||| || || ||||| ||
Sbjct 110342 GAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACC 110401
Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 32827
|| ||||| || || || || || |||||||||| || | || | | | | |
Sbjct 110402 GGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTC 110461
Query 32828 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 32869
|||| || ||||| || ||||| ||||||||||| ||
Sbjct 110462 CTTGTCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTT 110503
Score = 93.3 bits (102), Expect = 5e-14
Identities = 220/332 (66%), Gaps = 3/332 (1%)
Strand=Plus/Plus
Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942
||||| |||||||| || |||||| | || | || |||| ||||| || ||
Sbjct 110567 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 110626
Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002
| ||| || | || || || ||||| || || ||||| || |||||||||||
Sbjct 110627 AGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 110686
Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062
| |||||| | | ||| || ||| | ||||| || | || || || || |||
Sbjct 110687 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTAACAATT 110746
Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122
|||||| || || || || || | || || | ||| ||| | || || |
Sbjct 110747 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 110806
Query 33123 AGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179
||| || ||||| || | || ||| || || | ||| | |||||| | ||||| |||
Sbjct 110807 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 110866
Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|| ||||||||||| || ||||| | ||||||
Sbjct 110867 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 110898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633615129548000
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