Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq868 116 4e-21 >seq868 Length=196860 Score = 116 bits (128), Expect = 4e-21 Identities = 269/398 (68%), Gaps = 22/398 (6%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| || || || ||||| || ||||||| || ||||| || |||||| | || Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGA-GCAC 110184 Query 92986 AGGTA-GAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 ||| | |||| || |||||||| |||| |||||| |||| || || | | | ||| Sbjct 110185 AGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTT 110244 Query 93045 TTACTC--TACTAT-TTGG----TGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 ||| | || |||| ||||| || || | ||| | ||| ||| Sbjct 110245 GGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA-------ACAAGAGGCAGGCA 110297 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 |||||||| || | ||||||||| || || || | ||| ||| ||| || | |||||| Sbjct 110298 AAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGC 110357 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | ||| || || ||||| | ||| ||||| || || || ||| || || || ||||| Sbjct 110358 ATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCC 110417 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CT--GATC 93274 || || || ||||| || || | ||| | || || || || | || || |||| Sbjct 110418 TCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAA---TGTAGAGTCCTTGTCTTGGATC 110474 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 ||| ||| ||||| ||||| || ||||| || || || Sbjct 110475 CATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 110512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845973581200