Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq868 116 4e-21
>seq868
Length=196860
Score = 116 bits (128), Expect = 4e-21
Identities = 269/398 (68%), Gaps = 22/398 (6%)
Strand=Plus/Plus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
|||||| || || || ||||| || ||||||| || ||||| || |||||| | ||
Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGA-GCAC 110184
Query 92986 AGGTA-GAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044
||| | |||| || |||||||| |||| |||||| |||| || || | | | |||
Sbjct 110185 AGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTT 110244
Query 93045 TTACTC--TACTAT-TTGG----TGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
||| | || |||| ||||| || || | ||| | ||| |||
Sbjct 110245 GGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA-------ACAAGAGGCAGGCA 110297
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157
|||||||| || | ||||||||| || || || | ||| ||| ||| || | ||||||
Sbjct 110298 AAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGC 110357
Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217
| ||| || || ||||| | ||| ||||| || || || ||| || || || |||||
Sbjct 110358 ATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCC 110417
Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CT--GATC 93274
|| || || ||||| || || | ||| | || || || || | || || ||||
Sbjct 110418 TCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAA---TGTAGAGTCCTTGTCTTGGATC 110474
Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312
||| ||| ||||| ||||| || ||||| || || ||
Sbjct 110475 CATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 110512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556845973581200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |