Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq762 127 2e-24
seq1384 102 7e-17
seq829 100 2e-16
>seq762
Length=84765
Score = 127 bits (140), Expect = 2e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| || ||| | || || || || ||||||| ||||| ||| | |||||||| | |||
Sbjct 19809 GTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGAC 19868
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
|| |||| || || ||||| |||||||| || || |||||||| |||||| | ||
Sbjct 19869 AATGTCAAGTCGAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATC 19928
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
|| ||||| || || | || ||| ||||||| | |||||||||||||| ||||| ||
Sbjct 19929 TTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGGAG 19988
Query 22411 TCCAC 22415
|||||
Sbjct 19989 TCCAC 19993
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| || || || || | ||||| ||||| || | |
Sbjct 20253 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 20312
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || || || || ||||||||||| |||||||| ||
Sbjct 20313 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 20372
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | ||||| ||||| || || ||||| |||||| |||||| | ||| ||||||
Sbjct 20373 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAAC 20432
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | ||| | || ||||| | |||||||||
Sbjct 20433 ATCCAGAAGGAGTCTACTCTCCATCTGGTGTTGCGTCTTCGCGGAGGT 20480
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || ||| | ||||| || || |||| || || || ||| | |
Sbjct 20025 ATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 20084
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | |||| ||| || || |||||||||||||| |||||||| ||
Sbjct 20085 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 20144
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || || || || || ||||| |||||| ||| ||| | || ||||| |||
Sbjct 20145 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAAC 20204
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | ||| | ||| | || | || || |||
Sbjct 20205 ATCCAGAAGGAGTCTACTCTCCATCTGGTTCTTCGCCTTCGTGGTGGT 20252
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || ||||||| || || || | | || || | ||| || ||||
Sbjct 19529 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 19588
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || |||||||||||||| ||||| ||||| || || ||| | || || || |||||
Sbjct 19589 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 19648
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | ||||| ||||| |||| ||||||||||| || || ||||| ||
Sbjct 19649 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTAC 19701
>seq1384
Length=59147
Score = 102 bits (112), Expect = 7e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287
|| || |||||| | ||||| || || | || || || || || || ||||||| |
Sbjct 42690 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 42749
Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347
||| || |||| || || || ||||||||||| ||||| || || || |||||| |
Sbjct 42750 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGCAACGTTTG 42809
Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || || || || ||| | |||||| ||| || | ||||| ||||||||||||||
Sbjct 42810 ATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 42868
>seq829
Length=133551
Score = 100 bits (110), Expect = 2e-16
Identities = 124/170 (73%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
||||||| | ||| | |||| || || || ||||||||||| ||||| ||||| |
Sbjct 64911 CCGATACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACC 64852
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
||||||| || || || |||||||| || | || ||| ||| ||| ||||||| ||||
Sbjct 64851 AACAACGCCTCATCTTCGCCGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACA 64792
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||| || || || || || | ||| |||| | || | || ||||||
Sbjct 64791 ACATCCAGAAGGAGTCGACTCTTCATCTAGTCCTCCGTCTCCGTGGAGGT 64742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419717104123450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |