Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq868 219 8e-52 seq1094 194 3e-44 >seq868 Length=196860 Score = 219 bits (242), Expect = 8e-52 Identities = 367/517 (71%), Gaps = 13/517 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAAC 42691 |||||||||||||||||||| |||||||| | | |||||| | || | | || | || Sbjct 110512 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCA-AGACAAGGACTCTAC 110454 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| || | || || |||||| |||| || ||||| ||||||||||| || | || Sbjct 110453 ATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATT 110394 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACG 42810 |||||| || |||||| | ||| || | ||| |||||| || || |||||||| |||| Sbjct 110393 CGCCTCTATATTCTGGTTGAAGAAGCGTG-GTCTGATGCCAGGTCTTACCTTCTCCAACG 110335 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | | ||||| || || || | ||||||||||||||| ||||||| || Sbjct 110334 AGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CC 110278 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 || | | || || ||| | |||| | | | || || ||||| || |||| Sbjct 110277 ACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGA 110218 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGAC 42989 ||||| | |||||| | || | | || ||| ||| | || ||||||||||| | Sbjct 110217 TCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTG-CTCTTCTCGGCATGAACGCTGCT 110159 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC-A 43047 | ||| |||| ||||| ||| |||||| || | ||| || | | ||| | | Sbjct 110158 TTGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGA 110100 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 | | | ||||| | | ||| || |||||||||||||||||||| | | || | Sbjct 110099 GAAGTAT-TACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAA 110041 Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||||||| ||||||||||| |||||||||||||| Sbjct 110040 AGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 110004 >seq1094 Length=98106 Score = 194 bits (214), Expect = 3e-44 Identities = 481/719 (67%), Gaps = 17/719 (2%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745 |||| ||| || || || ||||| || || || ||| | || ||||| ||||||| Sbjct 29687 GCCAAGTTACAAACAGCGACCTCGTC--AGGTGCACAGTATTCAACTATCTCTGTGCAGA 29630 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 | || || |||||| || |||| || ||||| ||| |||||| || |||| Sbjct 29629 GATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCT 29570 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || ||||||||| || || |||||| | || ||| || | Sbjct 29569 TGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCT 29510 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||||||| ||| ||||| ||||||| ||||||||||| || || |||| Sbjct 29509 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCT 29450 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 | || ||| || | || || | || ||||||||| |||||||| || ||| Sbjct 29449 CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCC 29390 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | || || | || ||||||||| || || ||||| || || | ||||| Sbjct 29389 ATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGA 29330 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | || ||| || |||||| || || || | || ||||||| Sbjct 29329 GATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGA 29270 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || ||||||| ||||| | ||||| |||| || || || ||||| || || |||| Sbjct 29269 CATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCT 29210 Query 245166 GGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 ||| || ||| ||| | | | |||||| | || || |||| || || ||||| || Sbjct 29209 GGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGA 29152 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT--- 245280 || ||||| ||||| ||||| || || || | | || | ||| ||||||| Sbjct 29151 GTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGATTCTG-TGGACATTCA 29096 Query 245281 -GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || | ||||||||| | ||| || |||||| || || || | Sbjct 29095 GACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATAC 29036 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 | || || |||||| |||||||| || || ||||| || || || | | ||||| || Sbjct 29035 CGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAG-TTGTGCTTGTGG 28978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944314056968800