Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq868 219 8e-52
seq1094 194 3e-44
>seq868
Length=196860
Score = 219 bits (242), Expect = 8e-52
Identities = 367/517 (71%), Gaps = 13/517 (3%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAAC 42691
|||||||||||||||||||| |||||||| | | |||||| | || | | || | ||
Sbjct 110512 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCA-AGACAAGGACTCTAC 110454
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|||| || | || || |||||| |||| || ||||| ||||||||||| || | ||
Sbjct 110453 ATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATT 110394
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACG 42810
|||||| || |||||| | ||| || | ||| |||||| || || |||||||| ||||
Sbjct 110393 CGCCTCTATATTCTGGTTGAAGAAGCGTG-GTCTGATGCCAGGTCTTACCTTCTCCAACG 110335
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
| |||||| | | ||||| || || || | ||||||||||||||| ||||||| ||
Sbjct 110334 AGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CC 110278
Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930
|| | | || || ||| | |||| | | | || || ||||| || ||||
Sbjct 110277 ACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGA 110218
Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGAC 42989
||||| | |||||| | || | | || ||| ||| | || ||||||||||| |
Sbjct 110217 TCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTG-CTCTTCTCGGCATGAACGCTGCT 110159
Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC-A 43047
| ||| |||| ||||| ||| |||||| || | ||| || | | ||| | |
Sbjct 110158 TTGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGA 110100
Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107
| | | ||||| | | ||| || |||||||||||||||||||| | | || |
Sbjct 110099 GAAGTAT-TACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAA 110041
Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
|||||||||| ||||||||||| ||||||||||||||
Sbjct 110040 AGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 110004
>seq1094
Length=98106
Score = 194 bits (214), Expect = 3e-44
Identities = 481/719 (67%), Gaps = 17/719 (2%)
Strand=Plus/Minus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745
|||| ||| || || || ||||| || || || ||| | || ||||| |||||||
Sbjct 29687 GCCAAGTTACAAACAGCGACCTCGTC--AGGTGCACAGTATTCAACTATCTCTGTGCAGA 29630
Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805
| || || |||||| || |||| || ||||| ||| |||||| || ||||
Sbjct 29629 GATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCT 29570
Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865
||||||||||||| || ||||||||| || || |||||| | || ||| || |
Sbjct 29569 TGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCT 29510
Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925
| ||||||| ||| ||||| ||||||| ||||||||||| || || ||||
Sbjct 29509 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCT 29450
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
| || ||| || | || || | || ||||||||| |||||||| || |||
Sbjct 29449 CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCC 29390
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| || | || || | || ||||||||| || || ||||| || || | |||||
Sbjct 29389 ATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGA 29330
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
| || | | | || ||| || |||||| || || || | || |||||||
Sbjct 29329 GATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGA 29270
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
| || ||||||| ||||| | ||||| |||| || || || ||||| || || ||||
Sbjct 29269 CATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCT 29210
Query 245166 GGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223
||| || ||| ||| | | | |||||| | || || |||| || || ||||| ||
Sbjct 29209 GGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGA 29152
Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT--- 245280
|| ||||| ||||| ||||| || || || | | || | ||| |||||||
Sbjct 29151 GTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGATTCTG-TGGACATTCA 29096
Query 245281 -GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339
|| | || || || | ||||||||| | ||| || |||||| || || || |
Sbjct 29095 GACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATAC 29036
Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398
| || || |||||| |||||||| || || ||||| || || || | | ||||| ||
Sbjct 29035 CGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAG-TTGTGCTTGTGG 28978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944314056968800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |