Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq762 131 4e-25 seq868 116 9e-21 >seq762 Length=84765 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || |||||||| || || |||| Sbjct 20023 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCGGAC 19964 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||| ||||| |||||||||| ||| || ||| ||| Sbjct 19963 AGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGG 19904 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| |||| || || || || || | |||| ||||| ||| Sbjct 19903 ATGCCCTCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACT 19844 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 ||||| ||||| ||||| || || ||||||||||||| Sbjct 19843 TCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 19807 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||| | || || || ||||| ||||| || | Sbjct 20251 CCACCACGAAGGCGAAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGAC 20192 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || || || ||||| ||||| || || | ||| || |||| Sbjct 20191 AAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGG 20132 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || |||| ||| ||||| || Sbjct 20131 ATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACC 20072 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 20071 TCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| | ||||| || || || || || || || || || Sbjct 20443 TCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAA 20384 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || |||||| || || ||||||||||| || | || ||||| Sbjct 20383 ATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTG 20324 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||| || ||||| || || || ||||| || |||| |||||||||| Sbjct 20323 TCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACG 20264 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 20263 AAGATCTGCAT 20253 >seq868 Length=196860 Score = 116 bits (128), Expect = 9e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | ||| ||| | || ||| || | |||| ||||| || | | | |||| Sbjct 110211 AAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGA 110152 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236 | ||||| || || ||||| ||||||||| | || || |||||| | ||||| | Sbjct 110151 AGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATT 110092 Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296 |||| || || || || | ||||||||| || || || | |||||||| |||| Sbjct 110091 ACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAACT 110032 Query 269297 TCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 ||||||| ||||||||| |||||| ||| ||||||| ||| Sbjct 110031 TCTTCGAGAAGCGTGTCGCCGACTACCAAAAATCTGGTGTTATG 109988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179622206494140