Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq868 98.7 2e-15 >seq868 Length=196860 Score = 98.7 bits (108), Expect = 2e-15 Identities = 171/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 243505 ATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT 243564 || || || || ||||| | ||| | || ||| | || ||| |||| || ||| Sbjct 110236 ATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTT 110177 Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 | ||||||||| ||| | ||| || ||||| || ||||| || || || | || Sbjct 110176 CTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTC 110117 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 |||| || ||| | ||||| ||||| ||| ||||| |||| |||||||||| | Sbjct 110116 CTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAAC 110057 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCT 243744 || || ||| || || || ||||||||||| ||||||||| || || ||| || Sbjct 110056 ATCTCCCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAAAAATCT 109997 Query 243745 GGTGTGATG 243753 ||||| ||| Sbjct 109996 GGTGTTATG 109988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102849901715500