Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1094 282 5e-71 seq868 159 4e-34 >seq1094 Length=98106 Score = 282 bits (312), Expect = 5e-71 Identities = 1123/1747 (64%), Gaps = 49/1747 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 |||||||||||||| || ||||| || ||| ||||||| || | ||||| | Sbjct 30569 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 30510 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | |||||| | |||| || |||||| |||||| || ||||||||| Sbjct 30509 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 30450 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773 |||||||| || ||||| | || | | | | || | || ||||| ||||| Sbjct 30449 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 30393 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| || ||| ||||| | || |||| || |||||||||||| || || | Sbjct 30392 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCG 30333 Query 113834 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 || || | | |||||| | | |||||||||||| || | ||||||| || Sbjct 30332 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAT 30273 Query 113894 AG---ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | | | ||| || || || ||||| || | | |||| ||||| ||| Sbjct 30272 AACCAAGGGTTA---ACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTG 30216 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||||||||| || ||||| ||| || | |||||| ||| ||| || ||| Sbjct 30215 GATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGC 30156 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 || || || | ||| | |||||||| ||||| | | | | || ||| ||| | || | Sbjct 30155 ATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTG 30096 Query 114071 TCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||||||| | || | | || | || | ||||||||| | ||||| |||| Sbjct 30095 GCCCAGTCCCAAA-GATCGGTAGGTGTAACCTT-CCACATATCGTATTGGAGCTCTCCTT 30038 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG-AG 114187 | || ||||| || || || |||||||||| | || | || || | || || Sbjct 30037 GTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAG 29978 Query 114188 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 114247 | || ||| | ||||| || || ||||| || || | ||| | |||||| Sbjct 29977 ATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCC 29919 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATA--AATACATCCGCGAGACCTTGGACAC 114305 ||| || || || | |||||| | | || || ||||| |||||||| ||||||| Sbjct 29918 TCGGGAGACTCGAATGGGAGTCG--AAGAGCTAGGAAGACATCGGCGAGACCCTGGACAC 29861 Query 114306 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAA 114362 | | |||| || | || | | ||| ||| || || ||| || || || Sbjct 29860 CAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGT 29804 Query 114363 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 114422 | || | ||||| | | | || | || || |||||||| || || ||||||| Sbjct 29803 AGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCT 29744 Query 114423 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 114482 | | | || | |||| | | || ||||| || | || || || | || |||| Sbjct 29743 TCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCA 29684 Query 114483 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTG 114542 ||||| |||| | ||| || || ||| || | || || || || | ||| | Sbjct 29683 AGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGG 29624 Query 114543 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 114602 | || ||||| || | |||||| ||||| |||| ||| || ||||||||||| | Sbjct 29623 AGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGA 29564 Query 114603 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCG 114661 ||||| | || | || ||||| ||||| | || ||| || | | ||| | | || | | Sbjct 29563 GCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGG 29504 Query 114662 GCTGGCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAGGGCT 114715 || | ||| ||| || |||| ||| |||||||||| ||||| || Sbjct 29503 CCTTGA----TGGTCTTG---CGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCC 29451 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 ||||| || ||||| | || | || || || || | ||||| | || | | Sbjct 29450 TCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTC 29391 Query 114776 CATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAG 114835 ||| |||| || ||||||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct 29390 CATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAG 29331 Query 114836 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 ||||| ||| |||| |||| || | || || || | | || | || || | | Sbjct 29330 AGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAG 29271 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCC 114952 | ||| |||||||| || || ||||| | ||||| | || || | ||| || Sbjct 29270 ACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCC 29211 Query 114953 TGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGAT 115012 |||| ||||| || |||||| || || || || ||||| |||| ||||| | || Sbjct 29210 TGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAG 29151 Query 115013 TGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCA 115072 | || ||||| || ||| || | |||| | || |||| | || ||| Sbjct 29150 TTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCG 29091 Query 115073 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCG 115132 ||||| || || ||| ||||| || || | ||||| | |||| || |||||| Sbjct 29090 ATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCG 29031 Query 115133 ATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCA 115192 || ||| |||| | |||| | |||||| || | ||||| |||||| || Sbjct 29030 ATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCG 28971 Query 115193 GCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGG 115250 ||| ||||||||||| | |||||| || | | |||| ||||||| || ||| | Sbjct 28970 GCGGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATG 28913 Query 115251 TCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 115310 |||| | | ||| || |||||||||||||||| | || | ||| | ||||| Sbjct 28912 TCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGT 28853 Query 115311 ATTGGGG 115317 ||| || Sbjct 28852 GTTGTGG 28846 >seq868 Length=196860 Score = 159 bits (176), Expect = 4e-34 Identities = 308/450 (68%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| | || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 110006 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCAT 110065 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 ||| ||||||||||| || || || || | | ||| | | ||| ||| Sbjct 110066 AAAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG--GAGCAGA 110123 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||| | |||| |||||||||| | |||| ||| |||||| |||| || | Sbjct 110124 CGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCA 110183 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || | |||| | | ||| || || || || || | | | | Sbjct 110184 CAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCT 110243 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTC 126054 || | | | | | || | || | ||| ||| | | || |||||| || Sbjct 110244 TGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTC 110302 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||||||||| ||||||||||||||||| || || |||||| || |||||||| || Sbjct 110303 GGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAG 110362 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| ||||||||||||||||| || | |||||||| ||||||||||| ||||| || Sbjct 110363 ACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAAC 110422 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 | || || |||| |||||||| ||| || Sbjct 110423 AGCGGCAAAGGCAACGAGACGCTGAGCGAA 110452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597337695460400