Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq762 102 8e-17
seq1094 96.9 3e-15
seq829 91.5 1e-13
>seq762
Length=84765
Score = 102 bits (112), Expect = 8e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | || || ||||||| || ||||| || || ||||||||||| |
Sbjct 19732 ACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGA 19673
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| |||| || ||||||||||| || | || | |||||||||||||| ||
Sbjct 19672 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGG 19613
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| ||| || | || || | || ||
Sbjct 19612 AATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGAC 19553
Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419
|| | ||| | ||||||||||||
Sbjct 19552 CTCGAGAGTGATGGTCTTGCCGGT 19529
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | || || || || || ||||| ||||| | | ||| || | ||
Sbjct 20237 AAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATC 20178
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| | |||||| || || ||||||| | |||||||||||| || || || || || ||
Sbjct 20177 CTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTC 20118
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || ||| ||| || || | |||||| | || || || | || | ||
Sbjct 20117 CTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGT 20058
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| ||||||| ||| || |||||||| |||||
Sbjct 20057 CTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025
Score = 89.7 bits (98), Expect = 5e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || ||||| ||||||||||| | | |||||| | ||||| || ||||| |||
Sbjct 19993 GTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCG 19934
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || | || ||||| |||||||| || || || || ||||| || || |||
Sbjct 19933 GCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCTTGGATCTTCGACTTG 19874
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | ||||| | || ||||| | ||| | ||||||||| || | |||
Sbjct 19873 ACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTC 19814
Query 64427 TTTACGA 64433
|| ||||
Sbjct 19813 TTGACGA 19807
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | | ||| ||||| | || || || || || |||||||| ||
Sbjct 20480 ACCTCCGCGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 20421
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | || || | |||||| || ||| |||| || | |||||||||||| ||
Sbjct 20420 CAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGG 20361
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || || || || || ||| || || | ||| ||| | || ||
Sbjct 20360 GATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAAC 20301
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | ||| | ||||| || |||||||| || ||||| || |||||
Sbjct 20300 TTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
>seq1094
Length=98106
Score = 96.9 bits (106), Expect = 3e-15
Identities = 144/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 155225 AGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAA-CAAGAAACACGAAGATA 155283
||| ||||| || || | ||| ||||| || |||| ||| | |||||| || ||||| |
Sbjct 29049 AGTATCGTAAATACCGTCGATACTGTCCTCCTTCAT-GTCGATCAAGAAGCATGAAGAGA 28991
Query 155284 ATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGT 155343
||| | ||| || |||||| ||||| | || ||| ||||||||||| |||
Sbjct 28990 GTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGC 28931
Query 155344 TGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCG 155403
||| | || ||||| || ||||| || ||||| ||| ||||| ||||||| |
Sbjct 28930 TGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAG 28871
Query 155404 CCACGCGCATCAGCATGTGTTG 155425
|||| | ||| | |||||||||
Sbjct 28870 CCACTCTCATGATCATGTGTTG 28849
>seq829
Length=133551
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| |||||||||| ||||| || || || |||||||| || | || ||| || | |||
Sbjct 64758 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 64817
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||||||||| | ||||| || || |||||||| ||||| || || || ||
Sbjct 64818 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 64877
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 64878 TGGATCTT 64885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499631496957200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |