Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 185 9e-42
>seq1094
Length=98106
Score = 185 bits (204), Expect = 9e-42
Identities = 595/918 (65%), Gaps = 4/918 (0%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||||| ||||| ||||| |||| || ||||| ||| | || |||
Sbjct 28771 AACTACCAATACTTTGGATTCAAGACTCTTGAGAGATCATACCTTCTCCGTCTCGAGGGC 28830
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || |||| || || || || || | ||| | || || |||| |||||||| |
Sbjct 28831 AAGATTGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGAT 28890
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| || || || | | | | | || ||| |||| | ||| ||
Sbjct 28891 GATATTGAGAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACACACGCG 28950
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| || ||||| || ||| || || || |||| | ||||| || ||| ||||
Sbjct 28951 TCTCCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATC 29010
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| ||| ||| ||| |||| ||| | |||||| ||||| | ||
Sbjct 29011 GAC-ATGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGAT 29069
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || | || || || ||||| | | ||||||| | ||||||| || | ||
Sbjct 29070 CTCCAAGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTA 29129
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
||| || || || || | ||||||||| | || ||||||||||| || ||||||||
Sbjct 29130 CATTGCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAA 29189
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| | || | || || ||||||||||| | | | ||| |||||||| |||| ||
Sbjct 29190 CACAGCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCT 29249
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
|||||| |||||||| || || | ||| | || || ||||||||||||| || ||
Sbjct 29250 CGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGA 29309
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
| | || | || |||||||||||||| ||| | ||||| || || ||||| ||
Sbjct 29310 GGAAGTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCG 29369
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
|| ||||| || | |||| || | || ||||| || || ||||| || | ||
Sbjct 29370 TGTTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGA 29429
Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432
|||| || | || ||||| | | |||| ||||| | | |||||||
Sbjct 29430 TGTTTACGG-TGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTC 29488
Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492
| ||| || | || |||||| ||| | ||| | || | || ||||| |
Sbjct 29489 GCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 29548
Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552
| | || | ||| | | |||||| || |||| ||| || ||| || |||| |
Sbjct 29549 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTG 29608
Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612
| ||| ||||| ||||| ||||| ||||| || || || | | || ||||||
Sbjct 29609 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATACTGTGCACCTGACGAGG 29668
Query 94613 TTGCTGTGTGTAACCTGG 94630
| ||||| |||||| |||
Sbjct 29669 TCGCTGTTTGTAACTTGG 29686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494710027994800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |