Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1094 185 9e-42 >seq1094 Length=98106 Score = 185 bits (204), Expect = 9e-42 Identities = 595/918 (65%), Gaps = 4/918 (0%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| ||||| ||||| |||| || ||||| ||| | || ||| Sbjct 28771 AACTACCAATACTTTGGATTCAAGACTCTTGAGAGATCATACCTTCTCCGTCTCGAGGGC 28830 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||| || || || || || | ||| | || || |||| |||||||| | Sbjct 28831 AAGATTGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGAT 28890 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || || || || | | | | | || ||| |||| | ||| || Sbjct 28891 GATATTGAGAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACACACGCG 28950 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| || ||| || || || |||| | ||||| || ||| |||| Sbjct 28951 TCTCCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATC 29010 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| ||| |||| ||| | |||||| ||||| | || Sbjct 29011 GAC-ATGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGAT 29069 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || | || || || ||||| | | ||||||| | ||||||| || | || Sbjct 29070 CTCCAAGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTA 29129 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || || || || | ||||||||| | || ||||||||||| || |||||||| Sbjct 29130 CATTGCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAA 29189 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || | || || ||||||||||| | | | ||| |||||||| |||| || Sbjct 29190 CACAGCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCT 29249 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| || || | ||| | || || ||||||||||||| || || Sbjct 29250 CGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGA 29309 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | | || | || |||||||||||||| ||| | ||||| || || ||||| || Sbjct 29310 GGAAGTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCG 29369 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||| || | |||| || | || ||||| || || ||||| || | || Sbjct 29370 TGTTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGA 29429 Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 |||| || | || ||||| | | |||| ||||| | | ||||||| Sbjct 29430 TGTTTACGG-TGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTC 29488 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| || | || |||||| ||| | ||| | || | || ||||| | Sbjct 29489 GCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 29548 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | | || | ||| | | |||||| || |||| ||| || ||| || |||| | Sbjct 29549 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTG 29608 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | ||| ||||| ||||| ||||| ||||| || || || | | || |||||| Sbjct 29609 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATACTGTGCACCTGACGAGG 29668 Query 94613 TTGCTGTGTGTAACCTGG 94630 | ||||| |||||| ||| Sbjct 29669 TCGCTGTTTGTAACTTGG 29686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494710027994800