Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1094 95.1 1e-14 seq762 89.7 5e-13 seq868 84.2 2e-11 >seq1094 Length=98106 Score = 95.1 bits (104), Expect = 1e-14 Identities = 550/869 (63%), Gaps = 21/869 (2%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 |||| ||| |||| ||||| || || ||| || | | | ||| | || ||||| Sbjct 29696 GCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCT 29637 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | |||||| ||| || ||| || | || | |||||| || || || ||||| Sbjct 29636 GTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAA 29577 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAA---C 153773 || || ||| |||||||| | || ||||||||| ||||| |||| ||| | | Sbjct 29576 GCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTAC 29517 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 | | || | ||| || | || ||| ||| || |||||| ||| Sbjct 29516 CAAAGC---TTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCA 29460 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || |||||| ||||| ||||| || || || ||||| |||| | || ||| Sbjct 29459 TAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCAC 29400 Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 ||||| | ||| || | | | || || |||||| ||||| || | ||| || Sbjct 29399 ATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGA 29340 Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGC--CCATGTTGCGTT-TCAGATTG 154010 ||||| | ||| ||||| || || | | ||| | || || | | || | |||| Sbjct 29339 GCGTAGAAGAGATCGCGAGC---GCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCA 29283 Query 154011 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC 154070 || | | ||| || |||||||| || || | ||||| || | ||||| ||| Sbjct 29282 AGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGC 29223 Query 154071 TT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127 || ||| ||||| || || | | | | |||||||| || || | ||| || | Sbjct 29222 TTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACA 29163 Query 154128 AGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTT-GCTGCCGCGGGCGCGCACTTGATG 154186 | ||| | | | | ||||| || | || | ||| | | || | || | | || Sbjct 29162 ATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGG-CACGGATTCTGTG 29104 Query 154187 CACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCC 154245 || || | || || || || | | ||| || || || || ||| || || Sbjct 29103 GACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTAT 29045 Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305 ||| || |||||||| || || || | | ||| |||||| || ||| | | ||| | Sbjct 29044 CGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTG 28985 Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCTC 154364 | || || || | ||||||||| ||| |||||| ||||| | || ||| | Sbjct 28984 CTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA-C 28926 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 |||| ||| || ||||| || || |||||||| |||||||| |||| || || Sbjct 28925 ATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACT 28866 Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGC 154453 | ||||| |||||| || ||||||||||| Sbjct 28865 CTCATGATCATGTGTTGTGGACGTTCGGC 28837 >seq762 Length=84765 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | |||||||| || ||||||||||||||| Sbjct 20479 CCTCCGCGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20420 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | || ||||| | | | || || | ||| ||||| || || Sbjct 20419 AAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGG 20360 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || ||| || || | | || | ||||| | |||||| || Sbjct 20359 ATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACT 20300 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || || |||||||| Sbjct 20299 TCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 20253 >seq868 Length=196860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 ||||| || | ||||| | ||||| || || | || || || | || || ||| Sbjct 110230 GAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGC 110171 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||||| | ||| | ||||| ||||| || || ||||||||| | | Sbjct 110170 ATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCT 110111 Query 52734 CTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793 ||||| | ||||| | ||| | ||| || ||||| |||||| | ||||| || Sbjct 110110 CTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCC 110051 Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| || ||||||||||| ||||||||||| |||| ||| || Sbjct 110050 CTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 110007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249187013600