Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 95.1 1e-14
seq762 89.7 5e-13
seq868 84.2 2e-11
>seq1094
Length=98106
Score = 95.1 bits (104), Expect = 1e-14
Identities = 550/869 (63%), Gaps = 21/869 (2%)
Strand=Plus/Minus
Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656
|||| ||| |||| ||||| || || ||| || | | | ||| | || |||||
Sbjct 29696 GCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCT 29637
Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716
| |||||| ||| || ||| || | || | |||||| || || || |||||
Sbjct 29636 GTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAA 29577
Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAA---C 153773
|| || ||| |||||||| | || ||||||||| ||||| |||| ||| | |
Sbjct 29576 GCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTAC 29517
Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833
| | || | ||| || | || ||| ||| || |||||| |||
Sbjct 29516 CAAAGC---TTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCA 29460
Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893
|| || |||||| ||||| ||||| || || || ||||| |||| | || |||
Sbjct 29459 TAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCAC 29400
Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953
||||| | ||| || | | | || || |||||| ||||| || | ||| ||
Sbjct 29399 ATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGA 29340
Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGC--CCATGTTGCGTT-TCAGATTG 154010
||||| | ||| ||||| || || | | ||| | || || | | || | ||||
Sbjct 29339 GCGTAGAAGAGATCGCGAGC---GCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCA 29283
Query 154011 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC 154070
|| | | ||| || |||||||| || || | ||||| || | ||||| |||
Sbjct 29282 AGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGC 29223
Query 154071 TT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127
|| ||| ||||| || || | | | | |||||||| || || | ||| || |
Sbjct 29222 TTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACA 29163
Query 154128 AGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTT-GCTGCCGCGGGCGCGCACTTGATG 154186
| ||| | | | | ||||| || | || | ||| | | || | || | | ||
Sbjct 29162 ATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGG-CACGGATTCTGTG 29104
Query 154187 CACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCC 154245
|| || | || || || || | | ||| || || || || ||| || ||
Sbjct 29103 GACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTAT 29045
Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305
||| || |||||||| || || || | | ||| |||||| || ||| | | ||| |
Sbjct 29044 CGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTG 28985
Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCTC 154364
| || || || | ||||||||| ||| |||||| ||||| | || ||| |
Sbjct 28984 CTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA-C 28926
Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424
|||| ||| || ||||| || || |||||||| |||||||| |||| || ||
Sbjct 28925 ATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACT 28866
Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGC 154453
| ||||| |||||| || |||||||||||
Sbjct 28865 CTCATGATCATGTGTTGTGGACGTTCGGC 28837
>seq762
Length=84765
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || | ||| | | |||||||| || |||||||||||||||
Sbjct 20479 CCTCCGCGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20420
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| | || ||||| | | | || || | ||| ||||| || ||
Sbjct 20419 AAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGG 20360
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| || || | | || | ||||| | |||||| ||
Sbjct 20359 ATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACT 20300
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||||| ||| || || || ||||||||
Sbjct 20299 TCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
>seq868
Length=196860
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/224 (68%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673
||||| || | ||||| | ||||| || || | || || || | || || |||
Sbjct 110230 GAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGC 110171
Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733
|||||||| | ||| | ||||| ||||| || || ||||||||| | |
Sbjct 110170 ATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCT 110111
Query 52734 CTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
||||| | ||||| | ||| | ||| || ||||| |||||| | ||||| ||
Sbjct 110110 CTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCC 110051
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||| || ||||||||||| ||||||||||| |||| ||| ||
Sbjct 110050 CTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 110007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496249187013600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |