Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq762 118 1e-21 seq1384 89.7 5e-13 >seq762 Length=84765 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||||||| | Sbjct 20023 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCGGAC 19964 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || ||||| ||| ||||||| || |||||||||||||| Sbjct 19963 AGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGG 19904 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| || ||| ||| ||||| | |||| ||| || | |||||| Sbjct 19903 ATGCCCTCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACT 19844 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| || | || ||||| || ||||| || || Sbjct 19843 TCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 19809 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || || |||||||| | |||||| || || ||||| || ||| Sbjct 19701 GTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 19642 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| ||||| || |||||||||||||| ||| || |||| Sbjct 19641 GCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 19582 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| ||||||| | |||||| |||| || | || |||||||| Sbjct 19581 ACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 19529 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | |||||||| || || || || ||||| | Sbjct 20251 CCACCACGAAGGCGAAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGAC 20192 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||| ||||||||| | || | || |||||| ||||| || Sbjct 20191 AAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGG 20132 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | || | || || | ||||| Sbjct 20131 ATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACC 20072 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || || ||||||||||| || || ||||||||||| Sbjct 20071 TCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025 >seq1384 Length=59147 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 |||||||| ||||| ||| | || || ||| || ||||| ||||||||| ||||| Sbjct 42868 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 42809 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || || ||||| || || || || |||||||||||| ||| || ||||| | || Sbjct 42808 AAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 42749 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | || || | ||| || |||| ||| | || || ||||| |||||||| || || Sbjct 42748 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 42690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475488139791200