Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1094 251 9e-62 seq868 154 2e-32 >seq1094 Length=98106 Score = 251 bits (278), Expect = 9e-62 Identities = 1119/1751 (64%), Gaps = 57/1751 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| || ||||| || ||| ||||||| || | ||||| | Sbjct 30569 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 30510 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | |||||| | |||| || |||||| |||||| || ||||||||| Sbjct 30509 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 30450 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 || ||||| || ||||| | || | | | | || | || ||||| ||||| Sbjct 30449 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 30393 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || ||| ||||| | || |||| || ||||||||| || |||| | Sbjct 30392 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGA---ACCTCCA 30336 Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 | | | |||| | | |||||| | | |||||||||||| || | ||||||| | Sbjct 30335 TCGGCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTC 30276 Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907 | | | | | || || || || ||||| || | | |||| ||||| Sbjct 30275 AATAACCAAGGG----TTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGAT 30220 Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 ||||| ||||||||||| || ||||| ||| || | |||||| || ||| || Sbjct 30219 GTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGT 30160 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 ||||| || || | ||| | ||||| || ||||| | | | || ||| ||| | Sbjct 30159 TGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAA 30100 Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATA 116085 || | ||||||| | || | | || | || ||| ||||||| | ||||| Sbjct 30099 GGTGGCCCAGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCT 30042 Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145 ||||| || ||||| || || || ||||||| || | || | || || | || Sbjct 30041 CCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCA 29982 Query 116146 G-AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 || | || ||| | ||||| || || ||||| || || | ||| | || Sbjct 29981 ACAGATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTT 29923 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA--AATACATCCGCGAGACCTTGG 116262 ||||||| || || || | ||| || | | || || ||||| |||||||| ||| Sbjct 29922 GGCCTCGGGAGACTCGAATGGGAGTCG--AAGAGCTAGGAAGACATCGGCGAGACCCTGG 29865 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGA 116319 ||||| | |||| || | || | | ||| ||| || || ||| || || Sbjct 29864 ACACCAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGG 29808 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || | ||||| | | | || | || || |||||||| || || ||| Sbjct 29807 TAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGA 29748 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | | || | |||| | | || ||||| || | || || || | || Sbjct 29747 AGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAA 29688 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 |||| ||||| |||| | ||| || || ||| || | || || || || | | Sbjct 29687 GCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGA 29628 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || || ||||| || | |||||| ||||| |||| ||| || ||||||||| Sbjct 29627 TTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTG 29568 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 |||||||| | || | || ||||| ||||| | || ||| || | | ||| | | || Sbjct 29567 TAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTC 29508 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAG 116672 | | || | ||| ||| || |||| ||| |||||||||| ||||| Sbjct 29507 TGGGCCTTGA----TGGTCTTG---CGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAG 29455 Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 |||||||| || ||||| | | || | || || || || | || || | || Sbjct 29454 AGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAG 29395 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 | |||| |||| || |||||| |||||||||||||| ||||| ||||| || || | Sbjct 29394 TGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTA 29335 Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 ||||||||| ||| |||| |||| || | || || || | | || | || || Sbjct 29334 GAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTC 29275 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACC 116909 | || ||| |||||||| || || ||||| | ||||| | || ||| | || Sbjct 29274 AAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCC 29215 Query 116910 AGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATC 116969 | |||||| ||||| || || || ||| || || || ||||| |||| ||||| | Sbjct 29214 ACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTT 29155 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || | || ||||| || ||| || |||| | || ||||| | || Sbjct 29154 GGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAG 29095 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||| ||||| || || ||| ||||| || || | ||||| | |||| || || Sbjct 29094 ACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACC 29035 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 ||||| ||| |||| | |||| | |||||| || | ||||| |||||| Sbjct 29034 GTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGT 28975 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCG 117207 || ||| ||||||||||| | |||||| || | | |||| ||||||| || | Sbjct 28974 GCCGGCGGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTG 28917 Query 117208 TAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAAC 117267 || ||||| | || ||| || |||||||||||||||| | || | ||| | | Sbjct 28916 TATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATC 28857 Query 117268 ATGTATTGGGG 117278 |||| ||| || Sbjct 28856 ATGTGTTGTGG 28846 >seq868 Length=196860 Score = 154 bits (170), Expect = 2e-32 Identities = 305/444 (69%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 110006 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCAT 110065 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 ||| ||||||||||| || || || || | | ||| | | ||| ||| Sbjct 110066 AAAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG--GAGCAGA 110123 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | |||| |||||||||| | |||| ||| |||||| |||| || | Sbjct 110124 CGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCA 110183 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || | |||| | | ||| || || ||||| || | | | | Sbjct 110184 CAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCT 110243 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGA-GTTCCACAGCAAACT 127526 || | | | | | || | || | | |||| ||| | | || ||||| | Sbjct 110244 TGGACTGCTTGCTTGCTTGGACGATGGT-TCAAGTGGGAGAACAAGAGGCAG-GCAAAGT 110301 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||||||||| ||||||||||||||||| || || |||||| ||||||||||| | Sbjct 110302 CGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCA 110361 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 |||| ||||||||||||||||| || | ||||| || ||||||||||| ||||| | Sbjct 110362 GACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAA 110421 Query 127647 CACACGCGAACGCAAATAGACGCT 127670 || || || |||| ||||||| Sbjct 110422 CAGCGGCAAAGGCAACGAGACGCT 110445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490865370800