Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq762 118 1e-21
seq829 104 3e-17
seq1384 98.7 1e-15
>seq762
Length=84765
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| ||||| ||||| ||||| || || |||||||| |||| |||
Sbjct 19713 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 19654
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| ||||| ||||||||||||| || | || ||||||||| |
Sbjct 19653 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 19594
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||||| | | | ||||| || || || || | |||||||| |||
Sbjct 19593 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 19534
Query 46565 CCCGT 46569
|| ||
Sbjct 19533 CCGGT 19529
Score = 111 bits (122), Expect = 2e-19
Identities = 167/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||||| ||||| | | ||||||||||||||| | ||| |||||| ||||| |||||
Sbjct 20486 TTATTGACCTCCGCGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 20427
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||| | |||||| | || || | |||||| || || || || | | |||||||||
Sbjct 20426 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTC 20367
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538
|| || | | |||||| ||| |||||| ||||| ||| | | | ||||| ||
Sbjct 20366 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCAGACG 20308
Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || || |||| || || || || || |||| || || || ||||| |||||
Sbjct 20307 ACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
Score = 109 bits (120), Expect = 6e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||| ||||| || ||||| | || ||||| ||||| ||||||||
Sbjct 19988 CTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAA 19929
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || ||||| |||| || | || |||||| || ||||||| ||||| |
Sbjct 19928 GATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCTTGGATCTTCGACTTGACATT 19869
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || ||| ||||| || || | |||||||| ||||| || || || || ||
Sbjct 19868 GTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 19809
>seq829
Length=133551
Score = 104 bits (114), Expect = 3e-17
Identities = 127/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || | || ||||| ||||||||||||||
Sbjct 64778 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAA 64837
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||| || ||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 64838 GATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 64896
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | | || ||| || || || || | || || || ||||||||||
Sbjct 64897 TGTCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTCTTGCCCGTCA 64947
>seq1384
Length=59147
Score = 98.7 bits (108), Expect = 1e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
||||||| || ||||||||||| ||||| || | || ||||||||||| || ||||| |
Sbjct 42870 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 42811
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| || |||||||| | || | | |||||||||| |||||| ||||| |
Sbjct 42810 TCAAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 42751
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||| ||| || || || || | || || || || || || || ||||| || |
Sbjct 42750 CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGA 42691
Query 46584 AG 46585
||
Sbjct 42690 AG 42689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565223350527600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |