Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq868 104 2e-17 seq829 104 2e-17 seq762 104 2e-17 seq1384 87.8 2e-12 >seq868 Length=196860 Score = 104 bits (114), Expect = 2e-17 Identities = 189/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || | || ||||| | ||||||||| |||||| || Sbjct 110614 GTATGTGTCGATGAGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 110673 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || ||||| ||||| || ||| ||| ||||| | || || Sbjct 110674 CCCGTAGAAGCAGCGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTT 110733 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||| || || ||||| || ||||| || || || ||||| || || | | Sbjct 110734 CTCGTTAACAATTCCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCT 110793 Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | ||| || | | | ||||||| | ||||||||||| || | || || Sbjct 110794 CTCATCGTCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTC 110853 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || ||||| || || |||||||| Sbjct 110854 GGCGGTCCAGAATGAAGCCTCTGCCTTCTTGTACAT 110889 >seq829 Length=133551 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| |||||||||| || ||||| | ||| ||||| Sbjct 64885 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 64826 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | || |||||| ||||||||||||||| ||||| |||| || ||| Sbjct 64825 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 64766 Query 38448 TTGGTGCTGCGT 38459 | || || ||| Sbjct 64765 CTAGTCCTCCGT 64754 >seq762 Length=84765 Score = 104 bits (114), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| |||||| | | |||| | | || | | |||| Sbjct 19529 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATG--TCAAGA 19586 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| |||||| ||||||| ||||| | || | ||| |||| Sbjct 19587 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 19646 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| ||||| ||| || ||||||||||| |||||| | || || | Sbjct 19647 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 19706 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || ||| | | ||||| Sbjct 19707 ATCTCGTCCTCCGTCTTCGTGGCGG 19731 >seq1384 Length=59147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGT 38311 ||||| ||||| ||||| || || || || ||| |||| || ||| || |||| | | | Sbjct 42690 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 42749 Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | || | | || || |||| ||||| |||||||||||| | ||||| || || | Sbjct 42750 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGCAACGTTT 42808 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| || || ||||| || || | || || || |||||||||||| ||||| Sbjct 42809 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 42868 Query 38432 GG 38433 || Sbjct 42869 GG 42870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500159482899200