Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq868 104 2e-17
seq829 104 2e-17
seq762 104 2e-17
seq1384 87.8 2e-12
>seq868
Length=196860
Score = 104 bits (114), Expect = 2e-17
Identities = 189/276 (68%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| || || | || ||||| | ||||||||| |||||| ||
Sbjct 110614 GTATGTGTCGATGAGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 110673
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || ||||| ||||| || ||| ||| ||||| | || ||
Sbjct 110674 CCCGTAGAAGCAGCGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTT 110733
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||| || || ||||| || ||||| || || || ||||| || || | |
Sbjct 110734 CTCGTTAACAATTCCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCT 110793
Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | ||| || | | | ||||||| | ||||||||||| || | || ||
Sbjct 110794 CTCATCGTCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTC 110853
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || || ||||| || || ||||||||
Sbjct 110854 GGCGGTCCAGAATGAAGCCTCTGCCTTCTTGTACAT 110889
>seq829
Length=133551
Score = 104 bits (114), Expect = 2e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| |||||||||| || ||||| | ||| |||||
Sbjct 64885 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 64826
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | || |||||| ||||||||||||||| ||||| |||| || |||
Sbjct 64825 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 64766
Query 38448 TTGGTGCTGCGT 38459
| || || |||
Sbjct 64765 CTAGTCCTCCGT 64754
>seq762
Length=84765
Score = 104 bits (114), Expect = 2e-17
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| |||||||| |||| |||||| | | |||| | | || | | ||||
Sbjct 19529 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATG--TCAAGA 19586
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| |||||| ||||||| ||||| | || | ||| ||||
Sbjct 19587 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 19646
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| ||||| ||| || ||||||||||| |||||| | || || |
Sbjct 19647 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 19706
Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || ||| | | |||||
Sbjct 19707 ATCTCGTCCTCCGTCTTCGTGGCGG 19731
>seq1384
Length=59147
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGT 38311
||||| ||||| ||||| || || || || ||| |||| || ||| || |||| | | |
Sbjct 42690 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 42749
Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| || | | || || |||| ||||| |||||||||||| | ||||| || || |
Sbjct 42750 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGCAACGTTT 42808
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| || || ||||| || || | || || || |||||||||||| |||||
Sbjct 42809 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 42868
Query 38432 GG 38433
||
Sbjct 42869 GG 42870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500159482899200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |