Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq400 118 4e-21 seq762 111 6e-19 >seq400 Length=196057 Score = 118 bits (130), Expect = 4e-21 Identities = 192/276 (70%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 |||| || || || || ||||| ||| | ||||| ||||| ||||| |||||||| || | Sbjct 22065 TTACCGTCCCAGCATACTTCAACGATTCGCAACGTCAAGCTACTAAGGATGCAGGTCAAA 22124 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||| | || ||||| || | | || || || || || |||||||| || |||| Sbjct 22125 TTGCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCTGCTCTTGCTTATG 22184 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | | | | ||| | ||||| || | |||| || | |||| ||||||||| Sbjct 22185 GTTTGG-------AGAAGGAT--GAAGACAAGATTATTGCTGTCTATGATCTTGGTGGAG 22235 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 |||| ||||| || || ||| || | | || ||||| || || ||| | |||| Sbjct 22236 GAACCTTTGATATCTCCGTTCTTGAGATCCAGAAAGGTGTATTCGAGGTCAAGTCCACCA 22295 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 | ||||| ||||| | || || || ||| |||||| Sbjct 22296 ACGGTGACACTCACTTGGGTGGAGAGGATTTTGATA 22331 >seq762 Length=84765 Score = 111 bits (122), Expect = 6e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || ||||| || || || ||||| || || |||||||| |||| ||| | Sbjct 19807 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 19866 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | | | || || || ||||||||||| || || ||||| ||||| |||||||| | Sbjct 19867 ACAATGTCAAGTCGAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 19926 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 | ||| | || || ||||| |||||||| | || || | ||||| || || | |||| Sbjct 19927 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGG 19986 Query 391240 ATGCAACACTTCACTTAGT 391258 | | || || ||||| || Sbjct 19987 AGTCCACTCTCCACTTGGT 20005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975664481410040