Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq876 123 2e-22 seq301 91.5 1e-12 seq612 87.8 1e-11 >seq876 Length=341431 Score = 123 bits (136), Expect = 2e-22 Identities = 415/639 (65%), Gaps = 8/639 (1%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| || || || ||||| ||||| | ||| | || | |||| | || Sbjct 132684 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 132625 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | |||| || || || | || |||||||| ||||| ||||| ||||| | ||| Sbjct 132624 TCAAAAATACCCTCCTCGATAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 132565 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || ||||| || || || || |||||||| || |||| ||||| Sbjct 132564 AAGATGAGGACATTACGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCG 132505 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 |||||||| || || || |||| | |||||| ||||| || || || ||||| || Sbjct 132504 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 132445 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC- 518313 || ||||| | || || || | || || || || ||||||| ||||| | | || Sbjct 132444 GTAGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGTTGTTGACA 132385 Query 518314 -TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 ||| | || | ||||| || || | | |||| || || ||||| || || | Sbjct 132384 GTTCCT--CCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGA 132327 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTA 518431 | | || || | ||||||| || |||| | | || || | ||| || Sbjct 132326 TCTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTT 132268 Query 518432 TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTC 518490 |||| | || ||| | || || | | |||||||| | || || || | || Sbjct 132267 CCACCACGGTCAAGAACAGTGAAGGGGAAATGCTTCATATCAGCCTGGAC-CTCAGCATC 132209 Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550 | | | ||||| | || || ||||| || | ||| ||| |||| || || || Sbjct 132208 TGCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGC 132149 Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610 |||| | ||||| |||||||| |||| | | || || |||||||| | || | || Sbjct 132148 GACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTAAAGGCGACGAAGGA 132089 Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 || |||||||| || || || || || ||||| ||||| Sbjct 132088 AGGTGTTGTGCGGTTTCCCTGGTCGTTTGCAATGATTTC 132050 >seq301 Length=99005 Score = 91.5 bits (100), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||| ||||||||| || | || ||||||||||| || ||||||||| | || |||||| Sbjct 67547 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 67606 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || || |||||| ||| || ||| | |||| |||| ||||| || || Sbjct 67607 ACCGTCATTACTGGTGACCCGAATTTGTCTCTGGATGAGGTTGGAGTACC 67656 >seq612 Length=131943 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 518174 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 518233 ||||| || |||| ||||||||||||||| || || || || | | ||| || |||||| Sbjct 90299 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 90358 Query 518234 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 518293 ||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| ||| Sbjct 90359 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 90418 Query 518294 GTAATAACGGC 518304 || || || || Sbjct 90419 GTGATGACAGC 90429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780716702383780