Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq876 123 2e-22
seq301 91.5 1e-12
seq612 87.8 1e-11
>seq876
Length=341431
Score = 123 bits (136), Expect = 2e-22
Identities = 415/639 (65%), Gaps = 8/639 (1%)
Strand=Plus/Minus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
||||||||||| || || || ||||| ||||| | ||| | || | |||| | ||
Sbjct 132684 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 132625
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| |||| || || || | || |||||||| ||||| ||||| ||||| | |||
Sbjct 132624 TCAAAAATACCCTCCTCGATAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 132565
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| || || ||||| || || || || |||||||| || |||| |||||
Sbjct 132564 AAGATGAGGACATTACGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCG 132505
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|||||||| || || || |||| | |||||| ||||| || || || ||||| ||
Sbjct 132504 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 132445
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC- 518313
|| ||||| | || || || | || || || || ||||||| ||||| | | ||
Sbjct 132444 GTAGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGTTGTTGACA 132385
Query 518314 -TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372
||| | || | ||||| || || | | |||| || || ||||| || || |
Sbjct 132384 GTTCCT--CCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGA 132327
Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTA 518431
| | || || | ||||||| || |||| | | || || | ||| ||
Sbjct 132326 TCTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTT 132268
Query 518432 TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTC 518490
|||| | || ||| | || || | | |||||||| | || || || | ||
Sbjct 132267 CCACCACGGTCAAGAACAGTGAAGGGGAAATGCTTCATATCAGCCTGGAC-CTCAGCATC 132209
Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550
| | | ||||| | || || ||||| || | ||| ||| |||| || || ||
Sbjct 132208 TGCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGC 132149
Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610
|||| | ||||| |||||||| |||| | | || || |||||||| | || | ||
Sbjct 132148 GACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTAAAGGCGACGAAGGA 132089
Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649
|| |||||||| || || || || || ||||| |||||
Sbjct 132088 AGGTGTTGTGCGGTTTCCCTGGTCGTTTGCAATGATTTC 132050
>seq301
Length=99005
Score = 91.5 bits (100), Expect = 1e-12
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
||||| ||||||||| || | || ||||||||||| || ||||||||| | || ||||||
Sbjct 67547 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 67606
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964
|| || |||||| ||| || ||| | |||| |||| ||||| || ||
Sbjct 67607 ACCGTCATTACTGGTGACCCGAATTTGTCTCTGGATGAGGTTGGAGTACC 67656
>seq612
Length=131943
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 518174 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 518233
||||| || |||| ||||||||||||||| || || || || | | ||| || ||||||
Sbjct 90299 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 90358
Query 518234 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 518293
||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| |||
Sbjct 90359 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 90418
Query 518294 GTAATAACGGC 518304
|| || || ||
Sbjct 90419 GTGATGACAGC 90429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780716702383780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |