Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq876 233 2e-56 seq1324 150 2e-31 seq400 95.1 2e-14 >seq876 Length=341431 Score = 233 bits (258), Expect = 2e-56 Identities = 502/745 (67%), Gaps = 8/745 (1%) Strand=Plus/Minus Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 |||||||||| || ||||||||||| |||||| || || | ||||| | Sbjct 132725 CTTTCTTATGCTTGCGTTTAAACTCACTTACGAAGTGGTTAACAAGACGATTGTCGAAGT 132666 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | |||||||||||||| || || || ||||| | ||||| ||||| ||||| | || | Sbjct 132665 CCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCAAAAATACCCTCCTCGA 132606 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 | | || | || ||||| || || || ||||| || || || ||||| || || | Sbjct 132605 TAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGGACATTACGCT 132546 Query 7584 CGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643 | | || ||||| || |||||||| || || || || || ||||| || || || | Sbjct 132545 CACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTTGGCTCGTTGATGA 132486 Query 7644 TACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAAT 7703 | || ||| || || || || || | ||||| || || ||||| || || || | Sbjct 132485 TTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTTGTAGCTTGACGCTGGGAGT 132426 Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC-TTTCTTACCGAGATACGAT 7762 | | ||||| || || || || ||||| |||| |||| ||| | ||||| || | Sbjct 132425 CAGTGAAGTAAGCTGGTACAGTAACGACGGCGTTGTTGACAGTTCCT-CCGAGGTAAGCC 132367 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | ||| |||| ||| | | ||| || || ||||| |||| | || || Sbjct 132366 TCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATCTCCTCAGGTGTGAATTGC 132307 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| | || || || || ||||| || | | || || || || ||| | | ||| Sbjct 132306 TTCTTCTCGCCCTTGAACTCAACCTCGACGACTGGCTT-TC--CACCACGGTCAAGAACA 132250 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 | | | ||| |||||||| | ||||||| || | |||| | ||| || Sbjct 132249 GTGAAGGGGAAATGCTTCATATCAGCCTGGACCTCAGCATCTGCGTACTTGCGTCCAATC 132190 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 |||||||| ||||| || || ||||| | ||||||||||| ||||||||| || || Sbjct 132189 AGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCGACTTGGTTCTTGGCAGCA 132130 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| | ||| ||| || || ||||| |||||| | || || || || || || Sbjct 132129 TCTCCGATCAAACGCTCAGTA---TCTGTAAAGGCGACGAAGGAAGGTGTTGTGCGGTTT 132073 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || |||||||| ||||| ||||| | || || | | ||| || ||||| || || Sbjct 132072 CCCTGGTCGTTTGCAATGATTTCGATACGATCATCTCTGAAGATACCCACGCAAGAGTAG 132013 Query 8123 GTTGTTCCTAAATCAATACCGATTG 8147 || || || | ||| || || |||| Sbjct 132012 GTGGTACCCAGATCGATTCCTATTG 131988 >seq1324 Length=102552 Score = 150 bits (166), Expect = 2e-31 Identities = 250/359 (70%), Gaps = 13/359 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||||| | || || || | ||| Sbjct 88345 ATCGAAATCTTCTCCTCCCAAGTGGGTGTCACCAGCGGTTGAGAGAACCTCGAAAACACC 88404 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | |||||| ||| | |||||||| || || || ||||| || || | ||||| Sbjct 88405 ACGATCAATGGATAAGAGGGAAACATCGAAGGTTCCTCCACCGAGATCGTAGACAATGAT 88464 Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | ||| || || | | | |||| || || ||||| |||||||| || || || Sbjct 88465 TTGACGCTC---TC-----CCTCGGTCTTGTCAAGTCCGTATGCGATAGCTGCGGCGGTC 88516 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || | |||||||| ||||| || || ||| | ||||| || || ||| Sbjct 88517 GGTTCGTTGACGATACGAAGGACGTTCAAACCGGCGATAACACCAGCATCCTTGGTAGCT 88576 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||| || ||||| |||||||| ||||| || || || |||| || || || | Sbjct 88577 TGTCTCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCGTGGGTAACCTTGTGT 88636 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || ||||| |||| ||| ||||| || ||||| ||| | ||| |||||||| Sbjct 88637 CCGAGGTATGATTCGGCGACATCCTTCATCTTTCCAAGAATCATGGCTGAGATCTCTTC 88695 >seq400 Length=196057 Score = 95.1 bits (104), Expect = 2e-14 Identities = 196/284 (69%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||| || ||||||||||| || || || ||| | ||||| || || | ||| Sbjct 22330 ATCAAAATCCTCTCCACCCAAGTGAGTGTCACCGTTGGTGGACTTGACCTCGAATACACC 22271 Query 7516 TCCTTCAATGTTTAACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | | || | || |||| | | |||||| || || ||||| || ||| | | || | Sbjct 22270 TTTCTGGATCTC-AAGAACGGAGATATCAAAGGTTCCTCCACCAAGATCATAGAC-AGCA 22213 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| | ||||| | ||| || | ||| || || | ||| || || ||||| | Sbjct 22212 ATA----ATCTT-GTCTTCATCCTTCTCCAAACCATAAGCAAGAGCAGCAGCGGTTGGCT 22158 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTG 7692 | || | | ||| ||| ||| || || ||||| ||| | ||||| || || ||||| Sbjct 22157 CGTTGACTACACGGAGAACGTTAAGACCTGCAAT--TTGACCTGCATCCTTAGTAGCTTG 22100 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 |||||||||||||| ||||| || ||||| || || || |||| Sbjct 22099 ACGTTGCGAATCGTTGAAGTATGCTGGGACGGTAACAACGGCGT 22056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635115889589200