Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq876 233 2e-56
seq1324 150 2e-31
seq400 95.1 2e-14
>seq876
Length=341431
Score = 233 bits (258), Expect = 2e-56
Identities = 502/745 (67%), Gaps = 8/745 (1%)
Strand=Plus/Minus
Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463
|||||||||| || ||||||||||| |||||| || || | ||||| |
Sbjct 132725 CTTTCTTATGCTTGCGTTTAAACTCACTTACGAAGTGGTTAACAAGACGATTGTCGAAGT 132666
Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523
| |||||||||||||| || || || ||||| | ||||| ||||| ||||| | || |
Sbjct 132665 CCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCAAAAATACCCTCCTCGA 132606
Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583
| | || | || ||||| || || || ||||| || || || ||||| || || |
Sbjct 132605 TAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGGACATTACGCT 132546
Query 7584 CGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643
| | || ||||| || |||||||| || || || || || ||||| || || || |
Sbjct 132545 CACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTTGGCTCGTTGATGA 132486
Query 7644 TACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAAT 7703
| || ||| || || || || || | ||||| || || ||||| || || || |
Sbjct 132485 TTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTTGTAGCTTGACGCTGGGAGT 132426
Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC-TTTCTTACCGAGATACGAT 7762
| | ||||| || || || || ||||| |||| |||| ||| | ||||| || |
Sbjct 132425 CAGTGAAGTAAGCTGGTACAGTAACGACGGCGTTGTTGACAGTTCCT-CCGAGGTAAGCC 132367
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| || | ||| |||| ||| | | ||| || || ||||| |||| | || ||
Sbjct 132366 TCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATCTCCTCAGGTGTGAATTGC 132307
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882
||| | || || || || ||||| || | | || || || || ||| | | |||
Sbjct 132306 TTCTTCTCGCCCTTGAACTCAACCTCGACGACTGGCTT-TC--CACCACGGTCAAGAACA 132250
Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942
| | | ||| |||||||| | ||||||| || | |||| | ||| ||
Sbjct 132249 GTGAAGGGGAAATGCTTCATATCAGCCTGGACCTCAGCATCTGCGTACTTGCGTCCAATC 132190
Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002
|||||||| ||||| || || ||||| | ||||||||||| ||||||||| || ||
Sbjct 132189 AGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCGACTTGGTTCTTGGCAGCA 132130
Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062
|| ||||| | ||| ||| || || ||||| |||||| | || || || || || ||
Sbjct 132129 TCTCCGATCAAACGCTCAGTA---TCTGTAAAGGCGACGAAGGAAGGTGTTGTGCGGTTT 132073
Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122
|| |||||||| ||||| ||||| | || || | | ||| || ||||| || ||
Sbjct 132072 CCCTGGTCGTTTGCAATGATTTCGATACGATCATCTCTGAAGATACCCACGCAAGAGTAG 132013
Query 8123 GTTGTTCCTAAATCAATACCGATTG 8147
|| || || | ||| || || ||||
Sbjct 132012 GTGGTACCCAGATCGATTCCTATTG 131988
>seq1324
Length=102552
Score = 150 bits (166), Expect = 2e-31
Identities = 250/359 (70%), Gaps = 13/359 (4%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||| || |||||||| || || || ||||| | || || || | |||
Sbjct 88345 ATCGAAATCTTCTCCTCCCAAGTGGGTGTCACCAGCGGTTGAGAGAACCTCGAAAACACC 88404
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572
| |||||| ||| | |||||||| || || || ||||| || || | |||||
Sbjct 88405 ACGATCAATGGATAAGAGGGAAACATCGAAGGTTCCTCCACCGAGATCGTAGACAATGAT 88464
Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630
| ||| || || | | | |||| || || ||||| |||||||| || || ||
Sbjct 88465 TTGACGCTC---TC-----CCTCGGTCTTGTCAAGTCCGTATGCGATAGCTGCGGCGGTC 88516
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
||||| || | |||||||| ||||| || || ||| | ||||| || || |||
Sbjct 88517 GGTTCGTTGACGATACGAAGGACGTTCAAACCGGCGATAACACCAGCATCCTTGGTAGCT 88576
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|||| || ||||| |||||||| ||||| || || || |||| || || || |
Sbjct 88577 TGTCTCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCGTGGGTAACCTTGTGT 88636
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
||||| || ||||| |||| ||| ||||| || ||||| ||| | ||| ||||||||
Sbjct 88637 CCGAGGTATGATTCGGCGACATCCTTCATCTTTCCAAGAATCATGGCTGAGATCTCTTC 88695
>seq400
Length=196057
Score = 95.1 bits (104), Expect = 2e-14
Identities = 196/284 (69%), Gaps = 12/284 (4%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||| ||||| || ||||||||||| || || || ||| | ||||| || || | |||
Sbjct 22330 ATCAAAATCCTCTCCACCCAAGTGAGTGTCACCGTTGGTGGACTTGACCTCGAATACACC 22271
Query 7516 TCCTTCAATGTTTAACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574
| | || | || |||| | | |||||| || || ||||| || ||| | | || |
Sbjct 22270 TTTCTGGATCTC-AAGAACGGAGATATCAAAGGTTCCTCCACCAAGATCATAGAC-AGCA 22213
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
||| | ||||| | ||| || | ||| || || | ||| || || ||||| |
Sbjct 22212 ATA----ATCTT-GTCTTCATCCTTCTCCAAACCATAAGCAAGAGCAGCAGCGGTTGGCT 22158
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTG 7692
| || | | ||| ||| ||| || || ||||| ||| | ||||| || || |||||
Sbjct 22157 CGTTGACTACACGGAGAACGTTAAGACCTGCAAT--TTGACCTGCATCCTTAGTAGCTTG 22100
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736
|||||||||||||| ||||| || ||||| || || || ||||
Sbjct 22099 ACGTTGCGAATCGTTGAAGTATGCTGGGACGGTAACAACGGCGT 22056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635115889589200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |