Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 342 6e-89
seq868 158 2e-33
>seq1094
Length=98106
Score = 342 bits (378), Expect = 6e-89
Identities = 929/1396 (67%), Gaps = 37/1396 (3%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
||||| ||||| ||||| | || || ||||||| || ||||| |||||||| || |
Sbjct 28846 CCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATATTGAGAGTGCT 28905
Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730
| ||||||||| | ||||||| | ||| || | ||||| | |||||||||||
Sbjct 28906 ATCGAGACATACAATTTGATGTCCAGCAAGTACTTT-ACACACGCGTCTCCAACCCTCTT 28964
Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790
||| || |||||| | | ||| | || || ||| | || | | ||||||||
Sbjct 28965 TGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGA 29024
Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850
||| | || ||||||| ||||||| |||||| ||||| ||| |||||
Sbjct 29025 CAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGG 29084
Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910
|||||||| || | |||| || | |||| || ||| || |||||
Sbjct 29085 AGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATTGCTGGCACAAA 29144
Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970
|| | || | |||||| |||| ||||| || || || ||| |||||| | |||||
Sbjct 29145 CGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGT 29204
Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027
|||| | ||| | ||| || || |||| |||| || ||||||||||||||
Sbjct 29205 TGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGC 29264
Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGC 112085
||| || | ||||||||||| | | ||||| || | ||||| | |||| |
Sbjct 29265 TGATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGAGGAAGTTCGCGCT-- 29322
Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145
||||||||||||| |||||| |||||||||||||||||||||||| | |||||| ||| |
Sbjct 29323 CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAAT 29382
Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205
|| | ||| | || | || || || || |||||||| | |||| |||||
Sbjct 29383 GGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGAC 29442
Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263
|| ||||| || ||||| |||||||||| || ||| | | | | || ||| | |
Sbjct 29443 GAATTTGAGGCTCTCTATGAGAAGTACGAGGCAG-AAGGCAAGGGTC-GCAAGACCAT-C 29499
Query 112264 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322
|| | || | | ||| | | || ||| || | ||||||||||| || | || |
Sbjct 29500 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 29559
Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382
||||| ||||| || || || |||| |||||||||||| ||||| | ||| |||
Sbjct 29560 ATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGGTACCATCCGC 29619
Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACGGCTGTGT 112440
|| ||||| ||||| ||||| || | ||| ||| | || || ||| ||||| |
Sbjct 29620 AGCTCCAATCTCTGCACAGAGATAGTTGAA--TACTGTGCACCTGACGAGGTCGCTGTTT 29677
Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGA 112498
||||| | || || | |||||||| | || || | ||| | | | | || | ||
Sbjct 29678 GTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGATGGCAGCTACGA 29735
Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558
| | | || || ||||| || | |||| || ||| | |||| | || ||
Sbjct 29736 CTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAACAAGATCATCGA 29795
Query 112559 TAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615
| || | ||||| ||| ||| || || || ||| | | ||| | || ||
Sbjct 29796 CATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGTCACAGACCTAT 29852
Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 112675
|| | | |||||||| |||||||| ||||| ||| | | ||| | | |||| || ||
Sbjct 29853 TGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGACTCCCATTCGAGTC 29912
Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735
||| || || | ||||| | || || ||||| || || ||||| || |||||
Sbjct 29913 TCCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCACGCTGC-CTTGA 29971
Query 112736 GGCGA---GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792
| ||| ||| | ||| || ||||| | || || || | || ||||| ||
Sbjct 29972 CTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACATACGAAGGTTCCCC 30029
Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACG 112851
|||||||||||| | ||| |||| ||||||| ||||||| | ||| | | || | |
Sbjct 30030 AGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTACCGATCTTTGGG 30088
Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911
|||||| | | | ||| ||| |||||| || | ||||||||||||||| | | | |
Sbjct 30089 ACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAGTTTGCTCGTTG 30148
Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971
| || |||||||| ||| ||| |||||| | || || || || || || || |
Sbjct 30149 CTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTGTTTCGAGCCAT 30208
Query 112972 ACACGACGAACATCTA 112987
|||| | ||||||||
Sbjct 30209 ACACATCCAACATCTA 30224
>seq868
Length=196860
Score = 158 bits (174), Expect = 2e-33
Identities = 352/521 (68%), Gaps = 22/521 (4%)
Strand=Plus/Minus
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168
|||||| || || | ||||| || || ||||| | | ||| | | |||| | | |
Sbjct 110516 AGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTC 110457
Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228
| | || ||| |||| ||| | || ||||| ||||||||||||||||||||| ||||
Sbjct 110456 -TACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTT 110398
Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288
| ||| | |||| | ||| | |||||||| ||||| ||||||||||| ||||||||
Sbjct 110397 CATTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCA 110338
Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAA 102347
||||||| ||||| |||||||| || |||||| || ||||| || ||| |||
Sbjct 110337 ACGAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC--- 110282
Query 102348 TTATTGCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGC 102400
| | || ||||| || | || | | || || | || ||| || ||
Sbjct 110281 ----TCCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGC 110226
Query 102401 CGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAA 102460
|||||||| ||| | | ||| | ||||| ||||| || ||||| |||| |||||
Sbjct 110225 TGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAA 110166
Query 102461 TTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG 102520
||| |||| |||| ||||||| || ||||| | || | | ||
Sbjct 110165 CGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTC 110108
Query 102521 GGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTC 102578
||| | || || || ||| || ||||||||||| ||||||||||| |||
Sbjct 110107 GGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTT 110048
Query 102579 GACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619
| ||| ||||| ||||||||||| ||| | || | |||||
Sbjct 110047 GCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 110007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620725872733600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |