Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1094 342 6e-89 seq868 158 2e-33 >seq1094 Length=98106 Score = 342 bits (378), Expect = 6e-89 Identities = 929/1396 (67%), Gaps = 37/1396 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| ||||| ||||| | || || ||||||| || ||||| |||||||| || | Sbjct 28846 CCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATATTGAGAGTGCT 28905 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||||||| | ||||||| | ||| || | ||||| | ||||||||||| Sbjct 28906 ATCGAGACATACAATTTGATGTCCAGCAAGTACTTT-ACACACGCGTCTCCAACCCTCTT 28964 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || |||||| | | ||| | || || ||| | || | | |||||||| Sbjct 28965 TGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGA 29024 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||| | || ||||||| ||||||| |||||| ||||| ||| ||||| Sbjct 29025 CAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGG 29084 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 |||||||| || | |||| || | |||| || ||| || ||||| Sbjct 29085 AGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATTGCTGGCACAAA 29144 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 || | || | |||||| |||| ||||| || || || ||| |||||| | ||||| Sbjct 29145 CGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGT 29204 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||| | ||| | ||| || || |||| |||| || |||||||||||||| Sbjct 29205 TGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGC 29264 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGC 112085 ||| || | ||||||||||| | | ||||| || | ||||| | |||| | Sbjct 29265 TGATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGAGGAAGTTCGCGCT-- 29322 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 ||||||||||||| |||||| |||||||||||||||||||||||| | |||||| ||| | Sbjct 29323 CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAAT 29382 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || | ||| | || | || || || || |||||||| | |||| ||||| Sbjct 29383 GGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGAC 29442 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263 || ||||| || ||||| |||||||||| || ||| | | | | || ||| | | Sbjct 29443 GAATTTGAGGCTCTCTATGAGAAGTACGAGGCAG-AAGGCAAGGGTC-GCAAGACCAT-C 29499 Query 112264 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 || | || | | ||| | | || ||| || | ||||||||||| || | || | Sbjct 29500 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 29559 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||| ||||| || || || |||| |||||||||||| ||||| | ||| ||| Sbjct 29560 ATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGGTACCATCCGC 29619 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACGGCTGTGT 112440 || ||||| ||||| ||||| || | ||| ||| | || || ||| ||||| | Sbjct 29620 AGCTCCAATCTCTGCACAGAGATAGTTGAA--TACTGTGCACCTGACGAGGTCGCTGTTT 29677 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGA 112498 ||||| | || || | |||||||| | || || | ||| | | | | || | || Sbjct 29678 GTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGATGGCAGCTACGA 29735 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | | || || ||||| || | |||| || ||| | |||| | || || Sbjct 29736 CTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAACAAGATCATCGA 29795 Query 112559 TAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 | || | ||||| ||| ||| || || || ||| | | ||| | || || Sbjct 29796 CATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGTCACAGACCTAT 29852 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 112675 || | | |||||||| |||||||| ||||| ||| | | ||| | | |||| || || Sbjct 29853 TGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGACTCCCATTCGAGTC 29912 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||| || || | ||||| | || || ||||| || || ||||| || ||||| Sbjct 29913 TCCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCACGCTGC-CTTGA 29971 Query 112736 GGCGA---GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 | ||| ||| | ||| || ||||| | || || || | || ||||| || Sbjct 29972 CTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACATACGAAGGTTCCCC 30029 Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACG 112851 |||||||||||| | ||| |||| ||||||| ||||||| | ||| | | || | | Sbjct 30030 AGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTACCGATCTTTGGG 30088 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 |||||| | | | ||| ||| |||||| || | ||||||||||||||| | | | | Sbjct 30089 ACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAGTTTGCTCGTTG 30148 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || |||||||| ||| ||| |||||| | || || || || || || || | Sbjct 30149 CTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTGTTTCGAGCCAT 30208 Query 112972 ACACGACGAACATCTA 112987 |||| | |||||||| Sbjct 30209 ACACATCCAACATCTA 30224 >seq868 Length=196860 Score = 158 bits (174), Expect = 2e-33 Identities = 352/521 (68%), Gaps = 22/521 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||||| || || | ||||| || || ||||| | | ||| | | |||| | | | Sbjct 110516 AGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTC 110457 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 | | || ||| |||| ||| | || ||||| ||||||||||||||||||||| |||| Sbjct 110456 -TACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTT 110398 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 | ||| | |||| | ||| | |||||||| ||||| ||||||||||| |||||||| Sbjct 110397 CATTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCA 110338 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAA 102347 ||||||| ||||| |||||||| || |||||| || ||||| || ||| ||| Sbjct 110337 ACGAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC--- 110282 Query 102348 TTATTGCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGC 102400 | | || ||||| || | || | | || || | || ||| || || Sbjct 110281 ----TCCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGC 110226 Query 102401 CGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAA 102460 |||||||| ||| | | ||| | ||||| ||||| || ||||| |||| ||||| Sbjct 110225 TGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAA 110166 Query 102461 TTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG 102520 ||| |||| |||| ||||||| || ||||| | || | | || Sbjct 110165 CGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTC 110108 Query 102521 GGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTC 102578 ||| | || || || ||| || ||||||||||| ||||||||||| ||| Sbjct 110107 GGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTT 110048 Query 102579 GACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 | ||| ||||| ||||||||||| ||| | || | ||||| Sbjct 110047 GCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 110007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620725872733600