Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 255 7e-63
seq622 114 2e-20
seq1101 91.5 2e-13
seq1190 87.8 2e-12
seq520 87.8 2e-12
seq842 86.0 7e-12
seq1078 82.4 9e-11
>seq1094
Length=98106
Score = 255 bits (282), Expect = 7e-63
Identities = 1125/1752 (64%), Gaps = 63/1752 (4%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
||||||||| || ||||| |||||||| |||||||||||| ||||| | ||||| |
Sbjct 30477 GTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACGATGGT 30418
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
|| || || || ||||||||||||||||| | | ||||||||| | ||||| |
Sbjct 30417 ACGCT---GGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATATT 30361
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676
|| ||||| || || || ||| | | || | | |||||| | | |||||
Sbjct 30360 AGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGACCA 30301
Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAG-ATGCTTGTTGACCACGACAAATTCACCA 109734
|||||| | | ||||| | ||| || | | ||| || || |||||||||
Sbjct 30300 GAGACCCATATCGACAAGATCCTTCAATAACCAAGG--GTTAACGACTTGGAATTCACCA 30243
Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794
|| | |||||| ||||||||| | ||||| || ||||||||||| ||| |||
Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183
Query 109795 AGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851
|||||||| | ||| | || || ||||| ||||| | ||| | |||||| || |||
Sbjct 30182 AGGATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGA 30126
Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911
|| | | ||| | | | || | | |||| || || || | || | ||
Sbjct 30125 CCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTA--- 30069
Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971
||| ||| ||||||| ||| || | || | | ||| || ||||| | | | ||
Sbjct 30068 --ACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTC 30012
Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCG---GATGAAGCCTCTAGTGCCGCATGATAC 110028
||||| | || | || || | ||| ||||||| || || || || || ||
Sbjct 30011 TCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAG--TCAAG-GCAGCGTGGTAG 29955
Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088
|| ||||| || || || ||| | | | ||| | | ||||| || || | |
Sbjct 29954 ATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGGGAGTCGA 29895
Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148
| | || ||||| || |||||||| ||||| | | |||| || | || |
Sbjct 29894 AGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAA 29835
Query 110149 TTAGAGCGTCGAGCAGTTTCT-----ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGA 110203
|| || || || || || || ||||| ||||| |||||||| | || |
Sbjct 29834 TT---GC-TCTTGC-GTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 29780
Query 110204 GATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCT 110263
|||||| ||| || || || || || || | | ||| | | | | ||
Sbjct 29779 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTA-GCTGCCATCA 29721
Query 110264 CCTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322
|| ||||| || | |||||||||| ||| || | || || |||| ||||||
Sbjct 29720 TTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCA 29661
Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382
| |||||| | || || || || | ||||| || ||| ||| | ||||
Sbjct 29660 GGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 29601
Query 110383 TTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441
|||||||| | ||| | |||||| |||||||| ||||||||| | ||| | || || ||
Sbjct 29600 TTCTGATTACTCTTTCG-GTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTC 29542
Query 110442 CGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGC 110498
|| || | || ||| |||| | ||| | | || | ||| || || |||| | |
Sbjct 29541 GGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACC 29485
Query 110499 GAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGA 110558
||||| |||||||||| || | |||||||||| | ||||| |||||||
Sbjct 29484 CTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 29425
Query 110559 AAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTT 110618
|||||| || || ||| || | || | ||| | ||| || |||||| | |||
Sbjct 29424 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTT 29365
Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATC 110678
|||||| || || |||||||| | || |||| || || || ||| | || || |
Sbjct 29364 CATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTT 29305
Query 110679 ACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA 110738
|| ||||| | || || | || || | || ||| | ||||||||| ||||| ||
Sbjct 29304 TCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTA 29245
Query 110739 GACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792
|| |||| | || |||| | |||| |||| |||||| | ||||||
Sbjct 29244 GATCGCGAAAGCACCAGGGCGCTTATTTCCACCC---TGGTCAACATATCTGGCTGTGTT 29188
Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852
||||| || | ||||||||||| ||| || | ||| | || ||||| || |||
Sbjct 29187 GTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTA 29128
Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912
| | ||||||| || ||||| || || ||| ||||| || || ||| ||
Sbjct 29127 AGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGAT 29068
Query 110913 TTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAA 110971
||||| ||| |||| ||| | |||||||| || || || |||| || | |
Sbjct 29067 CATGGCACAAGTCT-TGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGA 29009
Query 110972 TTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCG 111031
| | ||||| ||||| | || | | || || || || ||||| || || | ||
Sbjct 29008 TCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACG 28949
Query 111032 CATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATC 111089
| || || | || |||| ||||||| |||||||| |||| || | |||
Sbjct 28948 CGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATC 28891
Query 111090 TTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTT 111149
| ||||||||||| | || |||| ||||| ||| | ||| || |||| | |||
Sbjct 28890 ATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTT 28831
Query 111150 TCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATC 111209
|| || | ||| ||||||| |||| || ||||||| ||||||||| | |
Sbjct 28830 GCCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTT 28771
Query 111210 GAAATCACGATC 111221
|||||| |||||
Sbjct 28770 GAAATCCCGATC 28759
>seq622
Length=89095
Score = 114 bits (126), Expect = 2e-20
Identities = 279/413 (68%), Gaps = 16/413 (4%)
Strand=Plus/Plus
Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564
|||||||||||| || || | || || | |||||||| ||| | ||| ||| | ||
Sbjct 13692 ATCGAAACGACCAGGACGCATAAGCGCCTTATCAAGAACATCAGGTCTGTTGGTACCAGC 13751
Query 11565 AATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621
| || || | ||| | || | ||| || |||||||| || || |||| ||| ||
Sbjct 13752 GAGAACAACCACTTGCTCGGT---AGTGTTAAATCCGTCCATCTCGGTAAGAATCTGATT 13808
Query 11622 GATCGTCTGTTCACGCTCATCGTTGG-AGGGCATA-----CCA-CCTGCCGAACGCTTCT 11674
|| || ||| || |||||||| | || | ||| ||| || | || |
Sbjct 13809 GAGAGTGGCTTCTCGTTCATCGTTTCCACCGCCGAATGATCCAGCCTTCCCA-CGAGCTT 13867
Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734
| |||| |||||| |||||||||||||| | ||||| || ||| | ||||
Sbjct 13868 TTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATAG 13927
Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794
||| | ||||| || | | || || ||||| || |||||||| ||||| | |
Sbjct 13928 TGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAAC 13987
Query 11795 CAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853
| | ||| ||||| ||| || || | ||| ||||||||| | || || || |||||
Sbjct 13988 CGGAAACGCTGAA-GAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 14046
Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
||||| || ||||| | ||||| |||| ||| ||||| || ||||| |||||
Sbjct 14047 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 14099
>seq1101
Length=54505
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 28162 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 28221
Query 136777 GGGAACAGCTTTT 136789
| || ||||| ||
Sbjct 28222 GTGATCAGCTATT 28234
>seq1190
Length=87043
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 24335 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 24276
Query 136777 GGGAACAGCTTTT 136789
| || || ||||
Sbjct 24275 GTGATCACATTTT 24263
>seq520
Length=168878
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 47721 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 47662
Query 136777 GGGAACAGCTTTT 136789
| || || ||||
Sbjct 47661 GTGATCAATTTTT 47649
>seq842
Length=85159
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/76 (86%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 18776 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 18835
Query 136777 GGGAACA---GCTTTT 136789
| || || ||||||
Sbjct 18836 GTGATCATTTGCTTTT 18851
>seq1078
Length=232387
Score = 82.4 bits (90), Expect = 9e-11
Identities = 198/295 (67%), Gaps = 16/295 (5%)
Strand=Plus/Minus
Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA--CGTGCCTGTTCGAAAA 11740
|| |||| ||| |||||||| ||||| ||||| || | || | ||| |||| |
Sbjct 213295 GCATCAAGCTCGTCGATGAAGACGATGGCAGGTTGTTTTCCTTTCGCGGCTG--CGAATA 213238
Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-A 11799
||||||| |||||||| ||||||||||| ||| | | ||| |||| | | | || |
Sbjct 213237 GTTCACGGACACGCTTAGCTCCAACACCAACGTAAACCTCGTCGAACTCAGATCCCGACA 213178
Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859
| ||| ||| || ||| | || ||||| | || || ||||| || || || ||
Sbjct 213177 TAAAGAA-GAACGGGACACCGGCTTCGCCAGCAACAGCGCGTGCGAGAAGCGTTTTTCCA 213119
Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919
|||||||| | ||| |||| | | | || ||| | ||| ||||| | ||||
Sbjct 213118 GTACCAGGAGGACCGACGAGCAAGACACCCTTGGGAAGCTTTCCACCA-----AGCGTAG 213064
Query 11920 CG-----CTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
|| ||| || |||| | ||| || || | |||| ||||||||||| ||
Sbjct 213063 CGAACTTCTCGGGACTCTTCAAGAAATCAACCAATTCCTGGAGTTCCTCCTTTGC 213009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588960318514000
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