Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1094 255 7e-63 seq622 114 2e-20 seq1101 91.5 2e-13 seq1190 87.8 2e-12 seq520 87.8 2e-12 seq842 86.0 7e-12 seq1078 82.4 9e-11 >seq1094 Length=98106 Score = 255 bits (282), Expect = 7e-63 Identities = 1125/1752 (64%), Gaps = 63/1752 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||||||||| || ||||| |||||||| |||||||||||| ||||| | ||||| | Sbjct 30477 GTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACGATGGT 30418 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || || || || ||||||||||||||||| | | ||||||||| | ||||| | Sbjct 30417 ACGCT---GGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATATT 30361 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676 || ||||| || || || ||| | | || | | |||||| | | ||||| Sbjct 30360 AGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGACCA 30301 Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAG-ATGCTTGTTGACCACGACAAATTCACCA 109734 |||||| | | ||||| | ||| || | | ||| || || ||||||||| Sbjct 30300 GAGACCCATATCGACAAGATCCTTCAATAACCAAGG--GTTAACGACTTGGAATTCACCA 30243 Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794 || | |||||| ||||||||| | ||||| || ||||||||||| ||| ||| Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183 Query 109795 AGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851 |||||||| | ||| | || || ||||| ||||| | ||| | |||||| || ||| Sbjct 30182 AGGATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGA 30126 Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911 || | | ||| | | | || | | |||| || || || | || | || Sbjct 30125 CCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTA--- 30069 Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971 ||| ||| ||||||| ||| || | || | | ||| || ||||| | | | || Sbjct 30068 --ACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTC 30012 Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCG---GATGAAGCCTCTAGTGCCGCATGATAC 110028 ||||| | || | || || | ||| ||||||| || || || || || || Sbjct 30011 TCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAG--TCAAG-GCAGCGTGGTAG 29955 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 || ||||| || || || ||| | | | ||| | | ||||| || || | | Sbjct 29954 ATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGGGAGTCGA 29895 Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148 | | || ||||| || |||||||| ||||| | | |||| || | || | Sbjct 29894 AGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAA 29835 Query 110149 TTAGAGCGTCGAGCAGTTTCT-----ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGA 110203 || || || || || || || ||||| ||||| |||||||| | || | Sbjct 29834 TT---GC-TCTTGC-GTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 29780 Query 110204 GATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCT 110263 |||||| ||| || || || || || || | | ||| | | | | || Sbjct 29779 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTA-GCTGCCATCA 29721 Query 110264 CCTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322 || ||||| || | |||||||||| ||| || | || || |||| |||||| Sbjct 29720 TTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCA 29661 Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382 | |||||| | || || || || | ||||| || ||| ||| | |||| Sbjct 29660 GGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 29601 Query 110383 TTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 |||||||| | ||| | |||||| |||||||| ||||||||| | ||| | || || || Sbjct 29600 TTCTGATTACTCTTTCG-GTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTC 29542 Query 110442 CGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGC 110498 || || | || ||| |||| | ||| | | || | ||| || || |||| | | Sbjct 29541 GGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACC 29485 Query 110499 GAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGA 110558 ||||| |||||||||| || | |||||||||| | ||||| ||||||| Sbjct 29484 CTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 29425 Query 110559 AAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTT 110618 |||||| || || ||| || | || | ||| | ||| || |||||| | ||| Sbjct 29424 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTT 29365 Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATC 110678 |||||| || || |||||||| | || |||| || || || ||| | || || | Sbjct 29364 CATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTT 29305 Query 110679 ACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA 110738 || ||||| | || || | || || | || ||| | ||||||||| ||||| || Sbjct 29304 TCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTA 29245 Query 110739 GACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792 || |||| | || |||| | |||| |||| |||||| | |||||| Sbjct 29244 GATCGCGAAAGCACCAGGGCGCTTATTTCCACCC---TGGTCAACATATCTGGCTGTGTT 29188 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 ||||| || | ||||||||||| ||| || | ||| | || ||||| || ||| Sbjct 29187 GTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTA 29128 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912 | | ||||||| || ||||| || || ||| ||||| || || ||| || Sbjct 29127 AGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGAT 29068 Query 110913 TTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAA 110971 ||||| ||| |||| ||| | |||||||| || || || |||| || | | Sbjct 29067 CATGGCACAAGTCT-TGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGA 29009 Query 110972 TTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCG 111031 | | ||||| ||||| | || | | || || || || ||||| || || | || Sbjct 29008 TCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACG 28949 Query 111032 CATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATC 111089 | || || | || |||| ||||||| |||||||| |||| || | ||| Sbjct 28948 CGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATC 28891 Query 111090 TTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTT 111149 | ||||||||||| | || |||| ||||| ||| | ||| || |||| | ||| Sbjct 28890 ATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTT 28831 Query 111150 TCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATC 111209 || || | ||| ||||||| |||| || ||||||| ||||||||| | | Sbjct 28830 GCCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTT 28771 Query 111210 GAAATCACGATC 111221 |||||| ||||| Sbjct 28770 GAAATCCCGATC 28759 >seq622 Length=89095 Score = 114 bits (126), Expect = 2e-20 Identities = 279/413 (68%), Gaps = 16/413 (4%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||||||||| || || | || || | |||||||| ||| | ||| ||| | || Sbjct 13692 ATCGAAACGACCAGGACGCATAAGCGCCTTATCAAGAACATCAGGTCTGTTGGTACCAGC 13751 Query 11565 AATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 | || || | ||| | || | ||| || |||||||| || || |||| ||| || Sbjct 13752 GAGAACAACCACTTGCTCGGT---AGTGTTAAATCCGTCCATCTCGGTAAGAATCTGATT 13808 Query 11622 GATCGTCTGTTCACGCTCATCGTTGG-AGGGCATA-----CCA-CCTGCCGAACGCTTCT 11674 || || ||| || |||||||| | || | ||| ||| || | || | Sbjct 13809 GAGAGTGGCTTCTCGTTCATCGTTTCCACCGCCGAATGATCCAGCCTTCCCA-CGAGCTT 13867 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | |||| |||||| |||||||||||||| | ||||| || ||| | |||| Sbjct 13868 TTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATAG 13927 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 ||| | ||||| || | | || || ||||| || |||||||| ||||| | | Sbjct 13928 TGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAAC 13987 Query 11795 CAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | ||| ||||| ||| || || | ||| ||||||||| | || || || ||||| Sbjct 13988 CGGAAACGCTGAA-GAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 14046 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| || ||||| | ||||| |||| ||| ||||| || ||||| ||||| Sbjct 14047 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 14099 >seq1101 Length=54505 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 28162 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 28221 Query 136777 GGGAACAGCTTTT 136789 | || ||||| || Sbjct 28222 GTGATCAGCTATT 28234 >seq1190 Length=87043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 24335 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 24276 Query 136777 GGGAACAGCTTTT 136789 | || || |||| Sbjct 24275 GTGATCACATTTT 24263 >seq520 Length=168878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 47721 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 47662 Query 136777 GGGAACAGCTTTT 136789 | || || |||| Sbjct 47661 GTGATCAATTTTT 47649 >seq842 Length=85159 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 18776 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 18835 Query 136777 GGGAACA---GCTTTT 136789 | || || |||||| Sbjct 18836 GTGATCATTTGCTTTT 18851 >seq1078 Length=232387 Score = 82.4 bits (90), Expect = 9e-11 Identities = 198/295 (67%), Gaps = 16/295 (5%) Strand=Plus/Minus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA--CGTGCCTGTTCGAAAA 11740 || |||| ||| |||||||| ||||| ||||| || | || | ||| |||| | Sbjct 213295 GCATCAAGCTCGTCGATGAAGACGATGGCAGGTTGTTTTCCTTTCGCGGCTG--CGAATA 213238 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-A 11799 ||||||| |||||||| ||||||||||| ||| | | ||| |||| | | | || | Sbjct 213237 GTTCACGGACACGCTTAGCTCCAACACCAACGTAAACCTCGTCGAACTCAGATCCCGACA 213178 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | ||| ||| || ||| | || ||||| | || || ||||| || || || || Sbjct 213177 TAAAGAA-GAACGGGACACCGGCTTCGCCAGCAACAGCGCGTGCGAGAAGCGTTTTTCCA 213119 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919 |||||||| | ||| |||| | | | || ||| | ||| ||||| | |||| Sbjct 213118 GTACCAGGAGGACCGACGAGCAAGACACCCTTGGGAAGCTTTCCACCA-----AGCGTAG 213064 Query 11920 CG-----CTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || ||| || |||| | ||| || || | |||| ||||||||||| || Sbjct 213063 CGAACTTCTCGGGACTCTTCAAGAAATCAACCAATTCCTGGAGTTCCTCCTTTGC 213009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588960318514000