Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1094 316 2e-81 seq868 158 1e-33 seq622 91.5 2e-13 >seq1094 Length=98106 Score = 316 bits (350), Expect = 2e-81 Identities = 1170/1808 (65%), Gaps = 39/1808 (2%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| |||||||| || || ||||| | | |||||| | | Sbjct 30569 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 30510 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| |||||| | |||| | ||||| ||| |||||| |||||| Sbjct 30509 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 30450 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG---ATTTCCCACACTGTG 105766 |||||| | || ||||| | || || | | | || | || ||||| || || Sbjct 30449 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 30393 Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826 ||| ||| ||||||||| | || |||| | || |||||| || ||||| || | Sbjct 30392 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCG 30333 Query 105827 TTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACG 105886 || || | | |||||| | | ||||| ||||| || | ||||| || | Sbjct 30332 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAT 30273 Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTC 105946 | ||| || | || || || || | | | || |||||||| | Sbjct 30272 AACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGAT 30213 Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| || || || || || || || | |||||| ||| ||| |||||||| Sbjct 30212 GTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATA 30153 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 || || | | | ||||||||||||||| | | |||||| ||| ||| | || Sbjct 30152 GGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCC 30093 Query 106067 CAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124 ||||| | || | | ||| | ||||||| ||||||| |||| ||| | ||||| | Sbjct 30092 CAGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTG 30035 Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGG-GCTTCAGCCAATTCA-CAGCT 106182 | | || ||||| || ||||||| || | ||| || |||| || | ||| ||| | Sbjct 30034 AAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGAT 29976 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 || ||| | ||||| || ||||| || ||||| | ||| | | ||||| || Sbjct 29975 GAAGTCAAGGCA-GCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTC 29917 Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCA 106301 || || |||| | || | | | | || ||||| |||||||| || ||||| | Sbjct 29916 GGGAGACTCGAATGGG-AGTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAA 29858 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAAT 106358 | ||||||||||||| || | ||| ||| || || ||| ||| || || | | Sbjct 29857 CAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGTAGT 29801 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | |||| |||| ||| | || || |||| || || || ||||| || | Sbjct 29800 TGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCT 29741 Query 106419 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 106478 | | || | ||| | | || ||||| || |||| || || | || ||||| | Sbjct 29740 GAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGT 29681 Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538 | |||||||| ||| || | ||| || | || ||||| || | ||||| | Sbjct 29680 TACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGC 29621 Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598 | || || || | ||||| || ||||||||| |||||| |||||||||||||||| Sbjct 29620 TGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCA 29561 Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCT 106657 || | || | || ||||| || || | || ||| || | | ||| | | || | | || Sbjct 29560 TGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCT 29501 Query 106658 GGTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714 | |||| ||| ||| | ||| | ||||||||||| ||||| || ||||| Sbjct 29500 TG----ATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAAT 29445 Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 106774 || ||||| | || | ||||| || || || || || | || | |||| | Sbjct 29444 TCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTA 29385 Query 106775 CCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834 ||| || |||||| ||||||||||| || ||||||||||| || | | |||||||| Sbjct 29384 CCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCG 29325 Query 106835 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 106894 | | ||| | || || | || ||||| || | ||||||||||| | || ||| Sbjct 29324 CGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCA 29265 Query 106895 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTT 106951 |||||||||||||| || |||| |||| || || || | ||| | || | Sbjct 29264 GCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCA 29205 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 ||||| | |||||| ||| || || || ||||| |||| |||||| | || | || Sbjct 29204 ACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCG 29145 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 ||||| || ||| || | | |||| | | |||| | || || ||||| Sbjct 29144 TTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCT 29085 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 ||||| ||| ||||| ||||| | | ||||| | || ||||||| ||| | Sbjct 29084 CCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTG 29025 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 |||||||| || |||| | |||||| || | || | | |||||| || || Sbjct 29024 TCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCA 28965 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 107249 ||||||||||| | ||||| || | | |||| ||||||| | ||||||||| | Sbjct 28964 AAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGA 28907 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 || ||||| || |||||||| || |||| ||||| | ||| | ||||| ||| | Sbjct 28906 TAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTG 28847 Query 107310 GTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGA 107368 | ||| | |||| ||||| || |||| || | || ||||||| || |||| Sbjct 28846 GACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATC-TCTCAAGAGTCTTGAAT 28788 Query 107369 CCAAAGTA 107376 |||||||| Sbjct 28787 CCAAAGTA 28780 >seq868 Length=196860 Score = 158 bits (174), Expect = 1e-33 Identities = 347/512 (68%), Gaps = 6/512 (1%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| | || |||||||| |||||||||||||| || ||||| ||||| |||||| Sbjct 110007 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATA 110066 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104 ||||||||||| || | || || | | | || | | ||| ||||| Sbjct 110067 AAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 110125 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 ||| | || |||||||||| | |||| ||| |||||| |||| ||| ||| Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 110185 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || || || | |||| ||| ||| |||||||| ||||| | | | | | || Sbjct 110186 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 110245 Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCT 117283 || | || | | || | || ||| ||| | | || |||||| || Sbjct 110246 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 110304 Query 117284 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGAC 117343 ||||||||| || || ||||| || || || || |||||| || |||||||| |||| Sbjct 110305 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 110364 Query 117344 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403 | |||||||||||||| | |||| | |||||| |||||||||||||||||||| ||| Sbjct 110365 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 110424 Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATT 117462 ||||| |||| || |||| ||||| | ||| | |||| | | |||| | | Sbjct 110425 CGGCAAAGGCAACGAGACGCTGAGCGAATG-TAGAGTCCTTGTCTTGGATCCATCTTACG 110483 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 ||||| | |||||||||| || || || || Sbjct 110484 GCCCAGTCGGCCTTCTTCTTGATGCAGGGAAC 110515 >seq622 Length=89095 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9363 TTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422 ||||| | || || |||||||| ||||||| |||||| || || | | || || Sbjct 13867 TTTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATA 13926 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482 || | ||| || ||||| || || |||||||||||||||||||| || | | Sbjct 13927 GTGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAA 13986 Query 9483 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 ||||| || ||| || || | ||||||||| || | || ||| |||||||| Sbjct 13987 CCGGAAACGCTGAAGAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 14046 Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||| || || || ||| | || | |||||| || |||||||| || || Sbjct 14047 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 14099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589965091761200