Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 316 2e-81
seq868 158 1e-33
seq622 91.5 2e-13
>seq1094
Length=98106
Score = 316 bits (350), Expect = 2e-81
Identities = 1170/1808 (65%), Gaps = 39/1808 (2%)
Strand=Plus/Minus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649
||||| |||||||| |||||||| || || ||||| | | |||||| | |
Sbjct 30569 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 30510
Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709
| |||| ||| |||||| | |||| | ||||| ||| |||||| ||||||
Sbjct 30509 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 30450
Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG---ATTTCCCACACTGTG 105766
|||||| | || ||||| | || || | | | || | || ||||| || ||
Sbjct 30449 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 30393
Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826
||| ||| ||||||||| | || |||| | || |||||| || ||||| || |
Sbjct 30392 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCG 30333
Query 105827 TTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACG 105886
|| || | | |||||| | | ||||| ||||| || | ||||| || |
Sbjct 30332 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAT 30273
Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTC 105946
| ||| || | || || || || | | | || |||||||| |
Sbjct 30272 AACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGAT 30213
Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006
||||| || || || || || || || | |||||| ||| ||| ||||||||
Sbjct 30212 GTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATA 30153
Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066
|| || | | | ||||||||||||||| | | |||||| ||| ||| | ||
Sbjct 30152 GGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCC 30093
Query 106067 CAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124
||||| | || | | ||| | ||||||| ||||||| |||| ||| | ||||| |
Sbjct 30092 CAGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTG 30035
Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGG-GCTTCAGCCAATTCA-CAGCT 106182
| | || ||||| || ||||||| || | ||| || |||| || | ||| ||| |
Sbjct 30034 AAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGAT 29976
Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242
|| ||| | ||||| || ||||| || ||||| | ||| | | ||||| ||
Sbjct 29975 GAAGTCAAGGCA-GCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTC 29917
Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCA 106301
|| || |||| | || | | | | || ||||| |||||||| || ||||| |
Sbjct 29916 GGGAGACTCGAATGGG-AGTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAA 29858
Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAAT 106358
| ||||||||||||| || | ||| ||| || || ||| ||| || || | |
Sbjct 29857 CAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGTAGT 29801
Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418
| |||| |||| ||| | || || |||| || || || ||||| || |
Sbjct 29800 TGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCT 29741
Query 106419 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 106478
| | || | ||| | | || ||||| || |||| || || | || ||||| |
Sbjct 29740 GAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGT 29681
Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538
| |||||||| ||| || | ||| || | || ||||| || | ||||| |
Sbjct 29680 TACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGC 29621
Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598
| || || || | ||||| || ||||||||| |||||| ||||||||||||||||
Sbjct 29620 TGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCA 29561
Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCT 106657
|| | || | || ||||| || || | || ||| || | | ||| | | || | | ||
Sbjct 29560 TGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCT 29501
Query 106658 GGTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714
| |||| ||| ||| | ||| | ||||||||||| ||||| || |||||
Sbjct 29500 TG----ATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAAT 29445
Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 106774
|| ||||| | || | ||||| || || || || || | || | |||| |
Sbjct 29444 TCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTA 29385
Query 106775 CCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834
||| || |||||| ||||||||||| || ||||||||||| || | | ||||||||
Sbjct 29384 CCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCG 29325
Query 106835 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 106894
| | ||| | || || | || ||||| || | ||||||||||| | || |||
Sbjct 29324 CGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCA 29265
Query 106895 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTT 106951
|||||||||||||| || |||| |||| || || || | ||| | || |
Sbjct 29264 GCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCA 29205
Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011
||||| | |||||| ||| || || || ||||| |||| |||||| | || | ||
Sbjct 29204 ACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCG 29145
Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071
||||| || ||| || | | |||| | | |||| | || || |||||
Sbjct 29144 TTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCT 29085
Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131
||||| ||| ||||| ||||| | | ||||| | || ||||||| ||| |
Sbjct 29084 CCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTG 29025
Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191
|||||||| || |||| | |||||| || | || | | |||||| || ||
Sbjct 29024 TCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCA 28965
Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 107249
||||||||||| | ||||| || | | |||| ||||||| | ||||||||| |
Sbjct 28964 AAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGA 28907
Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309
|| ||||| || |||||||| || |||| ||||| | ||| | ||||| ||| |
Sbjct 28906 TAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTG 28847
Query 107310 GTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGA 107368
| ||| | |||| ||||| || |||| || | || ||||||| || ||||
Sbjct 28846 GACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATC-TCTCAAGAGTCTTGAAT 28788
Query 107369 CCAAAGTA 107376
||||||||
Sbjct 28787 CCAAAGTA 28780
>seq868
Length=196860
Score = 158 bits (174), Expect = 1e-33
Identities = 347/512 (68%), Gaps = 6/512 (1%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| | || |||||||| |||||||||||||| || ||||| ||||| ||||||
Sbjct 110007 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATA 110066
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104
||||||||||| || | || || | | | || | | ||| |||||
Sbjct 110067 AAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 110125
Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164
||| | || |||||||||| | |||| ||| |||||| |||| ||| |||
Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 110185
Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224
|| || || || | |||| ||| ||| |||||||| ||||| | | | | | ||
Sbjct 110186 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 110245
Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCT 117283
|| | || | | || | || ||| ||| | | || |||||| ||
Sbjct 110246 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 110304
Query 117284 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGAC 117343
||||||||| || || ||||| || || || || |||||| || |||||||| ||||
Sbjct 110305 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 110364
Query 117344 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403
| |||||||||||||| | |||| | |||||| |||||||||||||||||||| |||
Sbjct 110365 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 110424
Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATT 117462
||||| |||| || |||| ||||| | ||| | |||| | | |||| | |
Sbjct 110425 CGGCAAAGGCAACGAGACGCTGAGCGAATG-TAGAGTCCTTGTCTTGGATCCATCTTACG 110483
Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494
||||| | |||||||||| || || || ||
Sbjct 110484 GCCCAGTCGGCCTTCTTCTTGATGCAGGGAAC 110515
>seq622
Length=89095
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 9363 TTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422
||||| | || || |||||||| ||||||| |||||| || || | | || ||
Sbjct 13867 TTTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATA 13926
Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482
|| | ||| || ||||| || || |||||||||||||||||||| || | |
Sbjct 13927 GTGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAA 13986
Query 9483 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542
||||| || ||| || || | ||||||||| || | || ||| ||||||||
Sbjct 13987 CCGGAAACGCTGAAGAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 14046
Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
||||| || || || ||| | || | |||||| || |||||||| || ||
Sbjct 14047 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 14099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589965091761200
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