Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq893 100 3e-16 >seq893 Length=111323 Score = 100 bits (110), Expect = 3e-16 Identities = 345/524 (66%), Gaps = 37/524 (7%) Strand=Plus/Minus Query 159276 TATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGC 159335 |||||| || |||||| || | || || ||||| ||| | || | ||||| |||| | | Sbjct 24764 TATCACTGGATTTGATGCTGTGTCCTTGCAACCCAACTCTGGTGCCCAGGGCGAGTTTAC 24705 Query 159336 AGGACT----GTTA---GCAA--TCCAAGCATACCATCAAGGATCAGGAGATGATAAAAG 159386 ||||| |||| |||| |||||| | | || | ||| || || | | | Sbjct 24704 TGGACTTCGTGTTATCCGCAAGTTCCAAGAACAGCAACCAGG--CAAGAAGCGCGACA-- 24649 Query 159387 AAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGC 159446 | || ||||| |||| || ||||| |||||||| || ||||| || | ||||| Sbjct 24648 -----TCTGCTTGATTCCAGTCTCCGCACACGGAACTAACCCAGCATCTGCCGCCATGGC 24594 Query 159447 AGGGATGAAAGTTGTAGGTGTCAAGTGTGATG--ATGAT-GGCAACATAGACATCAAAGA 159503 || ||| ||| ||| |||||||||| | || || || | || || | || Sbjct 24593 TGGAATGCGAGTCGTAACCATCAAGTGTGACACCAAGACCGGAAATCTCGATATGGAGGA 24534 Query 159504 TCTAGAGAAG--AAAGCAATCATGAATACATTT--GAACT--GT-CATGTATTATGATTA 159556 ||| |||| |||| | |||||| ||||| || || || ||||| | Sbjct 24533 TCT---GAAGGCAAAGTGCG-AGAAATACAGCGAAGAACTCGGTGCA---ATCATGATCA 24481 Query 159557 CATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA-CAGATATGTAAGATTGTT 159615 | ||||| |||| ||||| || || | | ||| | | | | ||| | ||||| Sbjct 24480 CCTATCCCAGTACATTCGGTGTCTTCGAGCCCGAAGTCAAAGCCGCT-TGTGACCTTGTT 24422 Query 159616 CATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTA 159675 ||| || ||||||| || ||||| | ||||| || || | ||||| ||| | ||||| Sbjct 24421 CATCAGCATGGTGGGCAAGTATACATGGATGGCGCCAACATGAATGCTCAGATTGGTCTC 24362 Query 159676 GCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGT 159735 || | || || || || || || ||| | ||| |||| |||||||||||| Sbjct 24361 TGTTCGCCCGGCGAGATCGGAGCTGACGTCTGCCATTTGAACCTACACAAGACATTCTGT 24302 Query 159736 ATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || ||||| ||||| || || || || |||||||| Sbjct 24301 ATTCCTCACGGTGGTGGTGGTCCAGGTGTTGGACCAATTGGTGT 24258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588035543136800