Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq829 140 7e-28
seq1384 138 3e-27
seq762 134 3e-26
seq1094 86.0 1e-11
>seq829
Length=133551
Score = 140 bits (154), Expect = 7e-28
Identities = 143/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || |||||||| ||||| || || || ||||| |||| || || | |||||||||
Sbjct 64761 ACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCG 64820
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || ||||||||||| || |||||||| || ||||| ||
Sbjct 64821 AGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 64880
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || || || ||| || || || ||||||| |||||
Sbjct 64881 ATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTCTTG 64940
Query 195112 CCTGTCA 195118
|| ||||
Sbjct 64941 CCCGTCA 64947
>seq1384
Length=59147
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|||||||| ||||| |||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct 42868 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 42809
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||| ||||| || ||||| || || ||||| || || || |||||| || |||
Sbjct 42808 AAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 42749
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| || || || || || || ||||||| |||||||| || | |||||| |||||
Sbjct 42748 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 42690
>seq762
Length=84765
Score = 134 bits (148), Expect = 3e-26
Identities = 146/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||||||||| ||||| || |||||||||| || || | ||||||||||| ||
Sbjct 20000 GTGGAGAGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTG 19941
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | ||||| || || ||||| ||||| || || ||||| || ||
Sbjct 19940 CTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCTTGGATCTT 19881
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || ||||| || || ||| ||||| || || | ||||| || ||
Sbjct 19880 CGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGT 19821
Query 195117 CAAAGTTTTTACGA 195130
| ||| || ||||
Sbjct 19820 AAGAGTCTTGACGA 19807
Score = 118 bits (130), Expect = 2e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || |||||||| || || || || || |||||||| | ||||| | || || |||
Sbjct 19713 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 19654
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| || |||||||| || ||||||||
Sbjct 19653 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 19594
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || || ||||||||| || || || || || | |||||
Sbjct 19593 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 19534
Query 195112 CCTGT 195116
|| ||
Sbjct 19533 CCGGT 19529
>seq1094
Length=98106
Score = 86.0 bits (94), Expect = 1e-11
Identities = 188/279 (67%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648
|||||||| | |||| | | ||||| ||||||||| | || | | ||||| |||
Sbjct 29332 TTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGTACATGG 29391
Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708
| || | || ||||| || || || |||| ||||||||| ||| ||| || |||
Sbjct 29392 ACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAATTTGAG 29451
Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767
|||| ||||| | ||||| ||| || ||| | | || | | | |||||||| |
Sbjct 29452 GCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAA-GACCATCAAGGCCCAGAA 29510
Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827
|| ||| | |||||| | || ||| |||| || | || || || |||||
Sbjct 29511 GCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTCATGCTCTACAA 29570
Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866
|||||| | || |||||||| ||||||||| ||||
Sbjct 29571 GGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGG 29609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109451321553710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |