Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq829 140 7e-28 seq1384 138 3e-27 seq762 134 3e-26 seq1094 86.0 1e-11 >seq829 Length=133551 Score = 140 bits (154), Expect = 7e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| ||||| || || || ||||| |||| || || | ||||||||| Sbjct 64761 ACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCG 64820 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || ||||||||||| || |||||||| || ||||| || Sbjct 64821 AGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 64880 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || || || ||| || || || ||||||| ||||| Sbjct 64881 ATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTCTTG 64940 Query 195112 CCTGTCA 195118 || |||| Sbjct 64941 CCCGTCA 64947 >seq1384 Length=59147 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 |||||||| ||||| |||| |||||||| ||||| ||||||||||| || |||||||| Sbjct 42868 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 42809 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||| ||||| || ||||| || || ||||| || || || |||||| || ||| Sbjct 42808 AAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 42749 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || || || || || || || ||||||| |||||||| || | |||||| ||||| Sbjct 42748 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 42690 >seq762 Length=84765 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| ||||| || |||||||||| || || | ||||||||||| || Sbjct 20000 GTGGAGAGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTG 19941 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | ||||| || || ||||| ||||| || || ||||| || || Sbjct 19940 CTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCTTGGATCTT 19881 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| || || ||| ||||| || || | ||||| || || Sbjct 19880 CGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGT 19821 Query 195117 CAAAGTTTTTACGA 195130 | ||| || |||| Sbjct 19820 AAGAGTCTTGACGA 19807 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || || || || || |||||||| | ||||| | || || ||| Sbjct 19713 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 19654 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || |||||||| || |||||||| Sbjct 19653 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 19594 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||||||| || || || || || | ||||| Sbjct 19593 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 19534 Query 195112 CCTGT 195116 || || Sbjct 19533 CCGGT 19529 >seq1094 Length=98106 Score = 86.0 bits (94), Expect = 1e-11 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| | |||| | | ||||| ||||||||| | || | | ||||| ||| Sbjct 29332 TTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGTACATGG 29391 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | || | || ||||| || || || |||| ||||||||| ||| ||| || ||| Sbjct 29392 ACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAATTTGAG 29451 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767 |||| ||||| | ||||| ||| || ||| | | || | | | |||||||| | Sbjct 29452 GCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAA-GACCATCAAGGCCCAGAA 29510 Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827 || ||| | |||||| | || ||| |||| || | || || || ||||| Sbjct 29511 GCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTCATGCTCTACAA 29570 Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 |||||| | || |||||||| ||||||||| |||| Sbjct 29571 GGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGG 29609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109451321553710