Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq876 147 2e-29 seq612 105 5e-17 seq400 102 7e-16 seq762 86.0 5e-11 >seq876 Length=341431 Score = 147 bits (162), Expect = 2e-29 Identities = 464/712 (65%), Gaps = 13/712 (2%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| |||||||| ||||||| ||||| | ||||| || | || || ||| | Sbjct 132831 GCTCTCCGTCGTCTCCGAACTGCATGCGAGCGTGCCAAGCGTACCCTCTCTTCTTCCGCA 132890 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 |||||| | ||||| | || || | |||||||| ||||||| | || | || | Sbjct 132891 CAAACCTCCATTGAGATTGACTCCCTGTTTGAGGGTATTGATTTCTACACATCCATCACC 132950 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || | ||| || || | || |||||||| | || | ||||| || Sbjct 132951 CGTGCTAGATTCGAGGAGCTCTGCCAGGATCTCTTCCGTTCTACTACCACCCCAGTCGAC 133010 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | ||| | |||||||| || ||||| || || || || || | || || Sbjct 133011 CGTGTGCTCGCCGATGCCAAGATTGACAAGTCCAAGGTTCACGAGATCGTCTTGGTCGGA 133070 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAA 552191 |||||||| | || || || | ||| | | | | | ||| ||||| || || Sbjct 133071 GGATCTACCCGTATCCCACGTATCCA-GAA--GCTCATTACCGATTACTTCAACGGCAAG 133127 Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | || |||| | || || |||||||||||||| || ||||||||| |||| | Sbjct 133128 GAGCCCAAC--AAGTCCATAAACCCTGATGAGGCTGTTGCGTACGGTGCCGCAGTTCAGG 133185 Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306 | || ||||| ||||| | || | || || | || || | || | || | |||| Sbjct 133186 CTGCCATTCTATCTGGTGATACTTCATCTAAGAGCACTAATGAGATCCTTCTCCTCGATG 133245 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 || | || || ||||| ||| | || || | ||| || ||||| || || || | Sbjct 133246 TTGCCCCGCTCTCTCTCGGTATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCA 133305 Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426 ||||||| || || || || || ||| || || ||||| | || ||||| ||| Sbjct 133306 GAAATACCACCATCCCAACCAAGAAGTCTGAGGTTTTCTCTACCTTCTCCGATAACCAAC 133365 Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 ||| |||| || ||| | ||||| ||||| | || ||| ||||| |||||| Sbjct 133366 CTGGTGTTCTCATCCAAGTCTTTGAGGGAGAGCGTCAACGCACGAAAGACAATAATTTGT 133425 Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 | || | || | | ||||| || || || |||||||| || || || || || | Sbjct 133426 TGGGCAAGTTCGAGCTCACTGGTATCCCACCCGCCCCTCGTGGTGTCCCACAGATCGAGG 133485 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||| || ||| |||||||||| ||||| |||| || ||||| ||| || Sbjct 133486 TTACCTTTGATCTCGATGCCAACGGAATCATGAACGTTTCTGCTCTTGAGAA 133537 Score = 109 bits (120), Expect = 4e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||||||||| || || | |||||| || ||||||||||| || ||||| || | || Sbjct 132404 ACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCTACAAAGGATGCCGGTCTGATC 132463 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || |||||||| || || ||||| || || ||||| ||||| |||| || || Sbjct 132464 GCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCCTACGGT 132523 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 ||||| || | ||| || | |||||| |||||||| ||| ||| || Sbjct 132524 CTTGACAAGAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGG 132576 >seq612 Length=131943 Score = 105 bits (116), Expect = 5e-17 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| |||||| ||| | | || || || ||||| || || || || || ||| || Sbjct 90451 GTTGGGCAAGAAAGTTGCCAAGGCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCA 90392 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||||||||| |||||||| |||||||| || || ||||| || || ||||| Sbjct 90391 ACGTCAAGCTACTAAGGATGCTGGTGCCATTGCTGGTCTCAACGTTCTCCGCATCATCAA 90332 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || ||||||||||| |||| || || || Sbjct 90331 CGAGCCAACTGCTGCTGCTATTGCCTACGGTCT 90299 >seq400 Length=196057 Score = 102 bits (112), Expect = 7e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || |||||||| || || || || ||||||||||||||||| ||||| || | ||| Sbjct 22067 ACCGTCCCAGCATACTTCAACGATTCGCAACGTCAAGCTACTAAGGATGCAGGTCAAATT 22126 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || ||||| ||||| ||| | |||| || || || |||||||| ||||| ||||| Sbjct 22127 GCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCTGCTCTTGCTTATGG 22185 >seq762 Length=84765 Score = 86.0 bits (94), Expect = 5e-11 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || | || || || ||| ||||| || |||||||| | || || Sbjct 20015 GAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGG--ATGTTGTAATCGGACAGGGTG 19958 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| ||||| |||||||| || || | | ||||||||| ||||| || || Sbjct 19957 CGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCC 19898 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || |||||||| || || || || || || ||||| | ||| | | |||||| Sbjct 19897 TCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGA-TGATTCGACTTCGAG 19839 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| | || || ||||||||||| || |||| Sbjct 19838 AGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 19807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029183355993700