Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq876 147 2e-29
seq612 105 5e-17
seq400 102 7e-16
seq762 86.0 5e-11
>seq876
Length=341431
Score = 147 bits (162), Expect = 2e-29
Identities = 464/712 (65%), Gaps = 13/712 (2%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||||| |||||||| ||||||| ||||| | ||||| || | || || ||| |
Sbjct 132831 GCTCTCCGTCGTCTCCGAACTGCATGCGAGCGTGCCAAGCGTACCCTCTCTTCTTCCGCA 132890
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|||||| | ||||| | || || | |||||||| ||||||| | || | || |
Sbjct 132891 CAAACCTCCATTGAGATTGACTCCCTGTTTGAGGGTATTGATTTCTACACATCCATCACC 132950
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| || | ||| || || | || |||||||| | || | ||||| ||
Sbjct 132951 CGTGCTAGATTCGAGGAGCTCTGCCAGGATCTCTTCCGTTCTACTACCACCCCAGTCGAC 133010
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
| || | ||| | |||||||| || ||||| || || || || || | || ||
Sbjct 133011 CGTGTGCTCGCCGATGCCAAGATTGACAAGTCCAAGGTTCACGAGATCGTCTTGGTCGGA 133070
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAA 552191
|||||||| | || || || | ||| | | | | | ||| ||||| || ||
Sbjct 133071 GGATCTACCCGTATCCCACGTATCCA-GAA--GCTCATTACCGATTACTTCAACGGCAAG 133127
Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249
| || |||| | || || |||||||||||||| || ||||||||| |||| |
Sbjct 133128 GAGCCCAAC--AAGTCCATAAACCCTGATGAGGCTGTTGCGTACGGTGCCGCAGTTCAGG 133185
Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306
| || ||||| ||||| | || | || || | || || | || | || | ||||
Sbjct 133186 CTGCCATTCTATCTGGTGATACTTCATCTAAGAGCACTAATGAGATCCTTCTCCTCGATG 133245
Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366
|| | || || ||||| ||| | || || | ||| || ||||| || || || |
Sbjct 133246 TTGCCCCGCTCTCTCTCGGTATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCA 133305
Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426
||||||| || || || || || ||| || || ||||| | || ||||| |||
Sbjct 133306 GAAATACCACCATCCCAACCAAGAAGTCTGAGGTTTTCTCTACCTTCTCCGATAACCAAC 133365
Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486
||| |||| || ||| | ||||| ||||| | || ||| ||||| ||||||
Sbjct 133366 CTGGTGTTCTCATCCAAGTCTTTGAGGGAGAGCGTCAACGCACGAAAGACAATAATTTGT 133425
Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546
| || | || | | ||||| || || || |||||||| || || || || || |
Sbjct 133426 TGGGCAAGTTCGAGCTCACTGGTATCCCACCCGCCCCTCGTGGTGTCCCACAGATCGAGG 133485
Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|||| || ||| |||||||||| ||||| |||| || ||||| ||| ||
Sbjct 133486 TTACCTTTGATCTCGATGCCAACGGAATCATGAACGTTTCTGCTCTTGAGAA 133537
Score = 109 bits (120), Expect = 4e-18
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||||||||| || || | |||||| || ||||||||||| || ||||| || | ||
Sbjct 132404 ACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCTACAAAGGATGCCGGTCTGATC 132463
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || || |||||||| || || ||||| || || ||||| ||||| |||| || ||
Sbjct 132464 GCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCCTACGGT 132523
Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
||||| || | ||| || | |||||| |||||||| ||| ||| ||
Sbjct 132524 CTTGACAAGAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGG 132576
>seq612
Length=131943
Score = 105 bits (116), Expect = 5e-17
Identities = 116/153 (76%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| |||||| ||| | | || || || ||||| || || || || || ||| ||
Sbjct 90451 GTTGGGCAAGAAAGTTGCCAAGGCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCA 90392
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||||||||| |||||||| |||||||| || || ||||| || || |||||
Sbjct 90391 ACGTCAAGCTACTAAGGATGCTGGTGCCATTGCTGGTCTCAACGTTCTCCGCATCATCAA 90332
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
|| || ||||||||||| |||| || || ||
Sbjct 90331 CGAGCCAACTGCTGCTGCTATTGCCTACGGTCT 90299
>seq400
Length=196057
Score = 102 bits (112), Expect = 7e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || |||||||| || || || || ||||||||||||||||| ||||| || | |||
Sbjct 22067 ACCGTCCCAGCATACTTCAACGATTCGCAACGTCAAGCTACTAAGGATGCAGGTCAAATT 22126
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|| || ||||| ||||| ||| | |||| || || || |||||||| ||||| |||||
Sbjct 22127 GCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCTGCTCTTGCTTATGG 22185
>seq762
Length=84765
Score = 86.0 bits (94), Expect = 5e-11
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||||||||| || | || || || ||| ||||| || |||||||| | || ||
Sbjct 20015 GAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGG--ATGTTGTAATCGGACAGGGTG 19958
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| |||||| ||||| |||||||| || || | | ||||||||| ||||| || ||
Sbjct 19957 CGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCC 19898
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432
|| |||||||| || || || || || || ||||| | ||| | | ||||||
Sbjct 19897 TCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGA-TGATTCGACTTCGAG 19839
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464
||| | || || ||||||||||| || ||||
Sbjct 19838 AGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 19807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029183355993700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |