Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq868 143 5e-29 >seq868 Length=196860 Score = 143 bits (158), Expect = 5e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||||||||| |||| | |||||||| ||| ||||||| ||||||||||| || Sbjct 110291 GCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAG 110350 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||| ||||| | || | || || | |||||| || | ||||| || || |||||||| Sbjct 110351 ACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAA 110410 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| ||||| || || || || || ||| | || |||| | || || ||||||| Sbjct 110411 GATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCTTGTCTTG 110470 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||||| | |||||||| ||||||||||||||||| || Sbjct 110471 GATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 110512 Score = 89.7 bits (98), Expect = 1e-12 Identities = 170/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||| ||||||||||||||| | |||||| | Sbjct 110640 TCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTA 110699 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || ||| | ||||| |||||| || ||||| || || || || || || |||| Sbjct 110700 CCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTAACAATTCCGTCAGATGCAG 110759 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | ||||| ||||| || || | || | | ||| | || |||| |||| Sbjct 110760 CGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCC 110819 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | || ||| ||| || | |||||| | |||||||| || || ||| | Sbjct 110820 AGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCT 110879 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 110880 TCTTGTACAT 110889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931507997939200