Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1094 217 3e-51 seq868 131 3e-25 >seq1094 Length=98106 Score = 217 bits (240), Expect = 3e-51 Identities = 801/1234 (65%), Gaps = 67/1234 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| ||||||||||||||||||||| |||||| | ||||| |||||||||||| Sbjct 29972 GTCAAGGCAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGA 29913 Query 221477 GAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||| || | || || | || | ||||| ||||| || ||||| || || | | | Sbjct 29912 GACTCGAATGGGAGTCGAAG-AGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGC 29854 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 || || ||||| | ||| | || || || || || || |||||| ||| Sbjct 29853 AATAGGTCTGTGACGGAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTC 29794 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| | |||| || || | || ||| |||||||| | Sbjct 29793 GATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTC 29734 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 | | || ||| || | || | || ||| || |||| || Sbjct 29733 GTA---------GCTGCCATCATTTTGG---TTGACGTAAGTTGGGAGAGCAAGAGAAGC 29686 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATG-----ATCTCTGTACAG 221770 || |||||| || || |||||||| ||| || |||| |||||||| ||| Sbjct 29685 CAAGTTACAAACAGCGACCTCGTCA-----GGTGCACAGTATTCAACTATCTCTGTGCAG 29631 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 || ||| || |||||| || |||| || |||||| ||| || ||| ||| ||| Sbjct 29630 AGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCC 29571 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| || || || ||||| || ||| | || || || ||| || Sbjct 29570 TTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGC 29511 Query 221891 TCTCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGT 221943 | ||||| || | ||| | |||| || | ||||| ||| ||||| Sbjct 29510 T-TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAG----- 29457 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 ||||| | |||| | |||||||| | || | || || || ||| | ||| || Sbjct 29456 --AGAGCCT--CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCA 29401 Query 222004 CATCAGACTCCA-GTGC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 |||||| |||| || | || || || || | || ||||||||| || || ||||| Sbjct 29400 CATCAGTGTCCATGTACCATTCTTCTCA---ACACGCTTCATGAAGAGATCTGGAATCCA 29344 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 || || | |||||||| | | || |||||| |||| ||| || || ||||| Sbjct 29343 TAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATC 29284 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 | |||||||| | ||||||||||| ||||| || |||| || | ||| || || || Sbjct 29283 AAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCG 29224 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGT 222238 ||| || |||||||| | || ||| ||| | | | |||||| | || || | || Sbjct 29223 CTTATTTCCACCCTGGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGA 29166 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298 || | |||||||| ||||| ||||| |||||| || || ||| | || | Sbjct 29165 ACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGATT 29109 Query 222299 CT---GGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 || | || || |||||||| || || | || ||||||||||| || |||||||| Sbjct 29108 CTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGA 29049 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 || || || || || ||| ||||||||| | || | || || || || || | Sbjct 29048 GTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGT 28989 Query 222416 TGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT 222474 || | || |||| | | |||| ||| || || ||| |||||||||||||| || Sbjct 28988 TGTGCTTGTGGT-GTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCT 28930 Query 222475 AGACATCAGATCGTACGTCTC--TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATG 222532 ||||||| || ||| ||||| || ||||| | || | ||||||||||| | Sbjct 28929 GGACATCAAATTGTATGTCTCGATAGCACTCT--CAATATCATCCCCGTGAATACCGACA 28872 Query 222533 GCGCATCTCATGTACATGTACTGGGGCC--TCTCCACAGGACCCTTGGAGCTGGAGAGCA 222590 || ||||||| ||||| || || | || || || | ||| ||||| | Sbjct 28871 GCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGA--A 28814 Query 222591 GGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 |||| ||| | || ||||||||||| |||||||| Sbjct 28813 GGTATGATCTCTCAAGAGTCTTGAATCCAAAGTA 28780 >seq868 Length=196860 Score = 131 bits (144), Expect = 3e-25 Identities = 336/515 (65%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||||||| |||||| |||||| | | |||||| | | || | |||| Sbjct 110512 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTCTACA 110453 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | |||| || || |||||||| ||||| ||||| ||||| ||| |||||| || Sbjct 110452 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 110393 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | || |||||| | ||| || || ||||| || || ||| ||||||||| Sbjct 110392 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 110333 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | | ||||| |||||||||| || ||||||||||| | | | | |||| Sbjct 110332 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CCAC 110276 Query 26050 TTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGAT 26108 ||| ||| || |||| | | ||| | | || | |||||||| ||||| Sbjct 110275 TTGAACCATCGTCC-AAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGAT 110217 Query 26109 CGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACT 26168 |||| | ||||| | ||||||||| | Sbjct 110216 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 110157 Query 26169 CATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAG 26228 |||| ||||||||||||| || || || | |||||| | || || || | Sbjct 110156 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 110097 Query 26229 ACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 ||| ||| |||| ||||| || ||||||||||| ||||| || | | || |||| Sbjct 110096 GTATTACAAGTCCGCC-AACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAGA 110038 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||||| || ||| | |||| |||||| ||| Sbjct 110037 CCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAA 110003 Score = 102 bits (112), Expect = 2e-16 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| ||||||||||||||| ||||||||| Sbjct 110898 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 110839 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG---CATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| ||||| || | ||| || Sbjct 110838 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 110779 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || ||||| || || || |||||||| || ||| || Sbjct 110778 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTTAACGAGAACCTCCTGGAGCGA 110719 Query 25654 TTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || || |||| | ||||| || |||||||| ||||| || Sbjct 110718 TTCAGCGGAGAGGTCCAGGTACCT-GAGGCTCGCTGCTTCTACGGGTTCCAAAT 110666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928820069507200