Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 217 3e-51
seq868 131 3e-25
>seq1094
Length=98106
Score = 217 bits (240), Expect = 3e-51
Identities = 801/1234 (65%), Gaps = 67/1234 (5%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476
|||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||
Sbjct 29972 GTCAAGGCAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGA 29913
Query 221477 GAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
|| ||| || | || || | || | ||||| ||||| || ||||| || || | | |
Sbjct 29912 GACTCGAATGGGAGTCGAAG-AGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGC 29854
Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595
|| || ||||| | ||| | || || || || || || |||||| |||
Sbjct 29853 AATAGGTCTGTGACGGAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTC 29794
Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655
||| | ||||| | |||| || || | || ||| |||||||| |
Sbjct 29793 GATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTC 29734
Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715
| | || ||| || | || | || ||| || |||| ||
Sbjct 29733 GTA---------GCTGCCATCATTTTGG---TTGACGTAAGTTGGGAGAGCAAGAGAAGC 29686
Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATG-----ATCTCTGTACAG 221770
|| |||||| || || |||||||| ||| || |||| |||||||| |||
Sbjct 29685 CAAGTTACAAACAGCGACCTCGTCA-----GGTGCACAGTATTCAACTATCTCTGTGCAG 29631
Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830
|| ||| || |||||| || |||| || |||||| ||| || ||| ||| |||
Sbjct 29630 AGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCC 29571
Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890
||||||||||| || || || ||||| || ||| | || || || ||| ||
Sbjct 29570 TTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGC 29511
Query 221891 TCTCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGT 221943
| ||||| || | ||| | |||| || | ||||| ||| |||||
Sbjct 29510 T-TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAG----- 29457
Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003
||||| | |||| | |||||||| | || | || || || ||| | ||| ||
Sbjct 29456 --AGAGCCT--CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCA 29401
Query 222004 CATCAGACTCCA-GTGC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060
|||||| |||| || | || || || || | || ||||||||| || || |||||
Sbjct 29400 CATCAGTGTCCATGTACCATTCTTCTCA---ACACGCTTCATGAAGAGATCTGGAATCCA 29344
Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120
|| || | |||||||| | | || |||||| |||| ||| || || |||||
Sbjct 29343 TAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATC 29284
Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180
| |||||||| | ||||||||||| ||||| || |||| || | ||| || || ||
Sbjct 29283 AAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCG 29224
Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGT 222238
||| || |||||||| | || ||| ||| | | | |||||| | || || | ||
Sbjct 29223 CTTATTTCCACCCTGGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGA 29166
Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298
|| | |||||||| ||||| ||||| |||||| || || ||| | || |
Sbjct 29165 ACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGATT 29109
Query 222299 CT---GGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355
|| | || || |||||||| || || | || ||||||||||| || ||||||||
Sbjct 29108 CTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGA 29049
Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415
|| || || || || ||| ||||||||| | || | || || || || || |
Sbjct 29048 GTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGT 28989
Query 222416 TGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT 222474
|| | || |||| | | |||| ||| || || ||| |||||||||||||| ||
Sbjct 28988 TGTGCTTGTGGT-GTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCT 28930
Query 222475 AGACATCAGATCGTACGTCTC--TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATG 222532
||||||| || ||| ||||| || ||||| | || | ||||||||||| |
Sbjct 28929 GGACATCAAATTGTATGTCTCGATAGCACTCT--CAATATCATCCCCGTGAATACCGACA 28872
Query 222533 GCGCATCTCATGTACATGTACTGGGGCC--TCTCCACAGGACCCTTGGAGCTGGAGAGCA 222590
|| ||||||| ||||| || || | || || || | ||| ||||| |
Sbjct 28871 GCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGA--A 28814
Query 222591 GGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624
|||| ||| | || ||||||||||| ||||||||
Sbjct 28813 GGTATGATCTCTCAAGAGTCTTGAATCCAAAGTA 28780
>seq868
Length=196860
Score = 131 bits (144), Expect = 3e-25
Identities = 336/515 (65%), Gaps = 7/515 (1%)
Strand=Plus/Minus
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| ||||||||| |||||| |||||| | | |||||| | | || | ||||
Sbjct 110512 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTCTACA 110453
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| | |||| || || |||||||| ||||| ||||| ||||| ||| |||||| ||
Sbjct 110452 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 110393
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
|| | || |||||| | ||| || || ||||| || || ||| |||||||||
Sbjct 110392 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 110333
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049
|||||| | | ||||| |||||||||| || ||||||||||| | | | | ||||
Sbjct 110332 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CCAC 110276
Query 26050 TTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGAT 26108
||| ||| || |||| | | ||| | | || | |||||||| |||||
Sbjct 110275 TTGAACCATCGTCC-AAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGAT 110217
Query 26109 CGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACT 26168
|||| | ||||| | ||||||||| |
Sbjct 110216 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 110157
Query 26169 CATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAG 26228
|||| ||||||||||||| || || || | |||||| | || || || |
Sbjct 110156 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 110097
Query 26229 ACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287
||| ||| |||| ||||| || ||||||||||| ||||| || | | || ||||
Sbjct 110096 GTATTACAAGTCCGCC-AACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAGA 110038
Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
|||||||||| || ||| | |||| |||||| |||
Sbjct 110037 CCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAA 110003
Score = 102 bits (112), Expect = 2e-16
Identities = 165/234 (71%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | ||| ||||||||||||||| |||||||||
Sbjct 110898 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 110839
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG---CATTTTCTCAAG 25593
||||||| | ||| |||| || | ||| ||||| || | ||| ||
Sbjct 110838 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 110779
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | |||||||| || || ||||| || || || |||||||| || ||| ||
Sbjct 110778 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTTAACGAGAACCTCCTGGAGCGA 110719
Query 25654 TTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | | || || || |||| | ||||| || |||||||| ||||| ||
Sbjct 110718 TTCAGCGGAGAGGTCCAGGTACCT-GAGGCTCGCTGCTTCTACGGGTTCCAAAT 110666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928820069507200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |