Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq400 113 3e-19 seq1384 109 4e-18 seq762 93.3 3e-13 >seq400 Length=196057 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || |||||||| || || ||||| ||||||||||| ||||| ||||| || || Sbjct 22065 TTACCGTCCCAGCATACTTCAACGATTCGCAACGTCAAGCTACTAAGGATGCAGGTCAAA 22124 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 ||||||||||||| ||| | ||| | | || || ||||| || || || |||||||||| Sbjct 22125 TTGCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCTGCTCTTGCTTATG 22184 Query 474864 GTCTTGATAAGAATTCTGACAA 474885 || | || ||| || ||||| Sbjct 22185 GTTTGGAGAAGGATGAAGACAA 22206 >seq1384 Length=59147 Score = 109 bits (120), Expect = 4e-18 Identities = 128/172 (74%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | ||| || || ||||||||||| || || | |||||| || ||||| ||| Sbjct 42847 AGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGGGGA 42788 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 ||||| |||||||| || ||||| |||||| ||||| ||||| | | || | Sbjct 42787 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAG---GACTCT 42731 Query 480726 ---TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACG 480774 || |||||||| || || ||||||||||| || ||||| | ||||||| Sbjct 42730 ACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAAGCTATGGAACG 42679 >seq762 Length=84765 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || ||||| || ||| || || | |||||||||| | || Sbjct 20246 ACGAAGGCGAAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGT 20187 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || | ||||||||||| ||||| || | || || || || || || || Sbjct 20186 ACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACC 20127 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || |||||| ||||| ||||||||||||| || | | || | Sbjct 20126 CTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGA-CCTCGA 20068 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| |||||||| |||||||| || Sbjct 20067 GTGTGATTGTCTTTCCGGTCAGAGTCTTCACGAAAATCTG 20028 Score = 87.8 bits (96), Expect = 1e-11 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTAC-AAGATGA-AGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| |||||||| || ||| || |||| ||| ||| || || ||||| | || Sbjct 20018 ACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATG--TTGTAATCGGACAGG 19961 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | |||||| ||||||||||| || || || | |||||| ||||| ||||| || Sbjct 19960 GTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATG 19901 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 || ||||| ||||| ||||| |||||| || || ||||| | || | | ||| Sbjct 19900 CCCTCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGA-CTTC 19842 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 || || || || || || || |||||||| |||| Sbjct 19841 GAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 19807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268087833965240