Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq400 113 3e-19
seq1384 109 4e-18
seq762 93.3 3e-13
>seq400
Length=196057
Score = 113 bits (124), Expect = 3e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
|||| || |||||||| || || ||||| ||||||||||| ||||| ||||| || ||
Sbjct 22065 TTACCGTCCCAGCATACTTCAACGATTCGCAACGTCAAGCTACTAAGGATGCAGGTCAAA 22124
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
||||||||||||| ||| | ||| | | || || ||||| || || || ||||||||||
Sbjct 22125 TTGCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCTGCTCTTGCTTATG 22184
Query 474864 GTCTTGATAAGAATTCTGACAA 474885
|| | || ||| || |||||
Sbjct 22185 GTTTGGAGAAGGATGAAGACAA 22206
>seq1384
Length=59147
Score = 109 bits (120), Expect = 4e-18
Identities = 128/172 (74%), Gaps = 6/172 (3%)
Strand=Plus/Minus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||||| | ||| || || ||||||||||| || || | |||||| || ||||| |||
Sbjct 42847 AGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGGGGA 42788
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725
||||| |||||||| || ||||| |||||| ||||| ||||| | | || |
Sbjct 42787 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAG---GACTCT 42731
Query 480726 ---TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACG 480774
|| |||||||| || || ||||||||||| || ||||| | |||||||
Sbjct 42730 ACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAAGCTATGGAACG 42679
>seq762
Length=84765
Score = 93.3 bits (102), Expect = 3e-13
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| || || || ||||| || ||| || || | |||||||||| | ||
Sbjct 20246 ACGAAGGCGAAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGT 20187
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| || | ||||||||||| ||||| || | || || || || || || ||
Sbjct 20186 ACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACC 20127
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || |||||| ||||| ||||||||||||| || | | || |
Sbjct 20126 CTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGA-CCTCGA 20068
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || ||||| |||||||| |||||||| ||
Sbjct 20067 GTGTGATTGTCTTTCCGGTCAGAGTCTTCACGAAAATCTG 20028
Score = 87.8 bits (96), Expect = 1e-11
Identities = 152/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTAC-AAGATGA-AGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||| |||||||| || ||| || |||| ||| ||| || || ||||| | ||
Sbjct 20018 ACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATG--TTGTAATCGGACAGG 19961
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | | |||||| ||||||||||| || || || | |||||| ||||| ||||| ||
Sbjct 19960 GTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATG 19901
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727
|| ||||| ||||| ||||| |||||| || || ||||| | || | | |||
Sbjct 19900 CCCTCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGA-CTTC 19842
Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
|| || || || || || || |||||||| ||||
Sbjct 19841 GAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 19807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268087833965240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |